Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30k12
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    31   0.17 
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    31   0.17 
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   1.6  
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    26   4.9  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   8.5  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    25   8.5  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   8.5  

>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = -3

Query: 237 FSSFLTVLTRLPLYLNWFFILNSKMCLSYSFGESPSSFLT 118
           FSSFL V+T++PL+    ++ +    + Y F ++ +S++T
Sbjct: 401 FSSFLVVITKVPLHFLPTWLRHVSRIVYYMFSKTSASYVT 440


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +2

Query: 86   KKIHWAQLPQTVRKLLGDSPKEYDRHIFEFSIKNQLRYRGSLVRTVKKDEKKYYEVL 256
            K+ H+  LP++VR++LGD P  +  +  E      L +   LV+ V  +E ++   L
Sbjct: 1015 KRHHYQDLPESVRRVLGDLPDGFTSYFVE-KFPMLLLHCYHLVKDVLYEESQFKRYL 1070


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 192 NWFFILNSKMCLSYSFGES 136
           +WFF L+SK CLS S  ES
Sbjct: 223 SWFFELHSKFCLSTSTYES 241


>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 95  HWAQLPQTVRKLLGDSPKEYDRHIFEFSIKNQL-RYR 202
           HWA+     RK + D  K Y    FE+ ++ +L RY+
Sbjct: 166 HWAEFEARYRKNVADLQKRYG--AFEYDVEAELIRYK 200


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -3

Query: 549 GTFXGTRGSKERIAFDLPRRPSDLALATNSRYSLRPMPNRRRQSAAV 409
           G    +R     ++ D+P    + +LA NS+ + +  PN+  Q +++
Sbjct: 274 GNKPNSRDEDSELSIDVPLSMLNRSLANNSQKNKKRTPNKPLQESSI 320


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 170 QKCVYRIPSESHLVAF-SQFEVTVPSGFSFLCSLQFPLPFSVFIII 36
           QK    +P E H+  + S F  ++     +LC+L   + FSVF+I+
Sbjct: 466 QKLDLPLPHE-HITNYKSTFGGSLSQWIGWLCALPISVLFSVFVIL 510


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 28/102 (27%), Positives = 50/102 (49%)
 Frame = +2

Query: 113 QTVRKLLGDSPKEYDRHIFEFSIKNQLRYRGSLVRTVKKDEKKYYEVLVQNSIQKLMLYP 292
           +TV K+L D+ +  +R  F     N +R+   L++  K   K+ YE    + +Q+     
Sbjct: 69  ETVNKMLDDAIQYLERCRFAL---NDVRHL--LIQLAKI--KQSYET--PDELQQAAKQF 119

Query: 293 YHLADMIIKGLRITPFIYYVEVVALLIELEKSYDTMPNFTAA 418
           Y LA    KG+ +   ++Y E  +LLI +++  +    F AA
Sbjct: 120 YQLAS---KGIGLELALFYEEYGSLLIRMQRWKEASEVFHAA 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,969
Number of Sequences: 5004
Number of extensions: 43731
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)