Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30k12
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0657 + 16694833-16694963,16695567-16695684,16696280-166963... 133 9e-32
01_02_0110 + 11210174-11210292,11211635-11211752,11212426-112125... 111 5e-25
11_01_0791 + 6627961-6630702 29 3.7
09_02_0501 - 9955987-9956244,9956329-9956583,9956713-9956884,995... 28 6.5
08_02_1159 + 24773328-24773994,24775430-24775558,24776080-247762... 28 6.5
10_08_0642 - 19525774-19526554,19526657-19527075 27 8.7
01_06_1501 + 37804029-37804600,37804626-37805388 27 8.7
>05_03_0657 +
16694833-16694963,16695567-16695684,16696280-16696376,
16700126-16700232,16700473-16700595,16700791-16700944,
16701237-16701297,16701417-16701781,16701875-16703483,
16703697-16703940
Length = 1002
Score = 133 bits (322), Expect = 9e-32
Identities = 68/182 (37%), Positives = 117/182 (64%), Gaps = 3/182 (1%)
Frame = +2
Query: 59 EEEIEDCIRKKIHWAQLPQTVRKLLGDSPKEYDRHIFEFSIKNQLRYRGSLVRTVKKDEK 238
E+ + IR+++ W LP+ ++ L S ++ R I ++ I+ +L + R + K E
Sbjct: 11 EQMMVKAIREELPWESLPKRIQAALV-SKDDWHRRIVDYCIRKRLPWTSCFARKICK-EG 68
Query: 239 KYYEVLVQNSIQKLMLYPYHLADMIIKGLRITPFIYYVEVVALLIELEKSYDTMPNFTAA 418
+YYE L++ + L LYPYHLAD I + +RI+PF YY +V+ ++ E+ YD++PNF+AA
Sbjct: 69 EYYEELMRYLRRNLALYPYHLADHICRVMRISPFKYYCDVLFEAMKNEQPYDSIPNFSAA 128
Query: 419 DCLRLLGIGRNEYLELVAKARSLGRRGR-SKAI-RSLLPRVPXNVPMQPWWXIE-LGYVL 589
D LR+ G+GRNE+++++ K RS + SK+I + LLP +P ++ ++PWW + + + L
Sbjct: 129 DSLRITGVGRNEFIDIMNKCRSKKIMWKLSKSIAKELLPALPADLAIEPWWGVRFVNFTL 188
Query: 590 EE 595
EE
Sbjct: 189 EE 190
>01_02_0110 +
11210174-11210292,11211635-11211752,11212426-11212522,
11212991-11213080,11213174-11213280,11213765-11213887,
11214055-11214208,11214582-11214642,11214748-11215103,
11216535-11218056,11218169-11218415
Length = 997
Score = 111 bits (266), Expect = 5e-25
Identities = 72/212 (33%), Positives = 117/212 (55%), Gaps = 33/212 (15%)
Frame = +2
Query: 59 EEEIEDCIRKKIHWAQLPQTVRKLLGDSPKEYDRHIFEFSIKNQLRYRGSLVRTVKKDEK 238
E+ + IR++ W LP+ ++ L + +E+ R I ++ I+ +L++ R V + E
Sbjct: 7 EQMVVKAIREECPWESLPKRLQSTL-HTKEEWHRRIVDYCIRKRLQWNTCFARRVCR-EG 64
Query: 239 KYYEVLVQNSIQKLMLYPYHLADMIIKGLRITPFIYYVEV-----------VALLIEL-- 379
+YYE +++ + L LYPYHLAD I + RI+PF YY ++ +AL I L
Sbjct: 65 EYYEEMMKYLRRNLALYPYHLADYICRVSRISPFRYYCDILFEAMKNGLFSIALRISLYL 124
Query: 380 -----------------EKSYDTMPNFTAADCLRLLGIGRNEYLELVAKARSLGRRGR-S 505
E+ YD++PNFTAAD LRL G+GRNE+++++ K RS + +
Sbjct: 125 QLIISDGNNLVITLKHGEQPYDSIPNFTAADALRLTGVGRNEFIDIMNKCRSKKLMWKLN 184
Query: 506 KAI-RSLLPRVPXNVPMQPWWXIEL-GYVLEE 595
K+I + LLP P + P+ PWW + L + +EE
Sbjct: 185 KSIAKELLPTQPVDFPIDPWWGVCLVNFTIEE 216
>11_01_0791 + 6627961-6630702
Length = 913
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 471 LKLGHWAAEADQKLFVLYCHEYHXTFRCSRGGXSNWATYW 590
LK+ + A ADQK LYC + FR SR + YW
Sbjct: 416 LKVSYHALPADQKNCFLYCSLFPEDFRISR---ESLVRYW 452
>09_02_0501 - 9955987-9956244,9956329-9956583,9956713-9956884,
9957000-9957227,9959102-9959235,9959319-9959402,
9959539-9959829,9960076-9960405,9960526-9960668,
9960970-9961126,9961210-9961313,9961423-9961583,
9961664-9961980,9962094-9962375,9962471-9962772,
9962848-9962938,9963262-9963338,9963428-9963587,
9963682-9963766,9963838-9963949,9964864-9964943,
9968644-9968981
Length = 1386
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 237 FSSFLTVLTRLPLYLNWFF 181
FS FL LTR+P++ W++
Sbjct: 1293 FSGFLIPLTRIPIWWRWYY 1311
>08_02_1159 +
24773328-24773994,24775430-24775558,24776080-24776220,
24777393-24777487,24777545-24778606
Length = 697
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 207 LPLYLNWFFILNSKMCLSYSFGESPSS 127
LP LNW + NS C + + +PSS
Sbjct: 153 LPAMLNWLILSNSSACSASTNASAPSS 179
>10_08_0642 - 19525774-19526554,19526657-19527075
Length = 399
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 501 LPRRPSDLALATNSRYSLRPMPNRRRQSAAVKLGI 397
LPRR +DL + LRP +RRR A G+
Sbjct: 164 LPRREADLRRLAAAPRRLRPQLHRRRDDATGAAGV 198
>01_06_1501 + 37804029-37804600,37804626-37805388
Length = 444
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 425 LRLLGIGR-NEYLELVAKARSLGRRGRSKAIRSLLPRVPXNVPMQPWWXI 571
L+ +G G L +V A RR R+ + SL+ R VPM WW +
Sbjct: 286 LQRVGAGMATSCLAMVVAALVEARRLRAASDASLVDRPGATVPMGVWWLV 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,196,007
Number of Sequences: 37544
Number of extensions: 263963
Number of successful extensions: 649
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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