Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30k12
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   3.0  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   3.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.0  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   9.3  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    21   9.3  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   9.3  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 262 KQHTEAYALPLSLS*YD 312
           +QH   YA P+S S YD
Sbjct: 126 QQHNNGYASPMSTSSYD 142


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 464 IPDIHYDLCLIGG 426
           IPD+ YD  ++GG
Sbjct: 64  IPDLSYDFIVVGG 76


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 400 HCIVAFLQLNQKCHHFYIINK 338
           HCI   L+    CHH  ++++
Sbjct: 13  HCIQQILESVHHCHHNGVVHR 33


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = -3

Query: 555 CIGTFXGTRGSKERIAF-DLP 496
           CIG F  T  S ER+ F D P
Sbjct: 181 CIGAFDVTLESGERVTFLDTP 201


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = +3

Query: 531 EYHXTFRCSRGGXSNWATYWRKTL 602
           E   + RCS      W   WR +L
Sbjct: 16  ESRCSVRCSAASGLRWFEIWRDSL 39


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 53  KMEEEIEDCIRKKIHWAQLPQTVRKLLGDSPKEYDRHI 166
           K  EEI D I+KK    Q  ++    L D P++Y + +
Sbjct: 121 KSLEEILDEIKKKTTRFQDSRSKDVYLIDYPEDYGKRV 158


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 53  KMEEEIEDCIRKKIHWAQLPQTVRKLLGDSPKEYDRHI 166
           K  EEI D I+KK    Q  ++    L D P++Y + +
Sbjct: 121 KSLEEILDEIKKKTTRFQDSRSKDVYLIDYPEDYGKRV 158


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 53  KMEEEIEDCIRKKIHWAQLPQTVRKLLGDSPKEYDRHI 166
           K  EEI D I+KK    Q  ++    L D P++Y + +
Sbjct: 121 KSLEEILDEIKKKTTRFQDSRSKDVYLIDYPEDYGKRV 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,048
Number of Sequences: 438
Number of extensions: 3153
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)