Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30k08
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 28 1.2
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 28 1.2
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 28 1.6
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 27 2.2
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 27 2.9
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 27 3.8
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 5.0
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 26 5.0
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 26 6.6
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 26 6.6
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 26 6.6
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 6.6
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 25 8.8
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual 25 8.8
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 28.3 bits (60), Expect = 1.2
Identities = 23/85 (27%), Positives = 36/85 (42%)
Frame = +2
Query: 353 ASTGMIASIHNFLYANLVNEKGTPEQKELFLRDYTKGSLGCFALSEPGAGTDVASIRTRA 532
AS + ASI FL+A+ E EL+L D LSE +V TR
Sbjct: 438 ASCNLCASIVTFLFAHESKGLTLEEINELYLSDAKPWMSRPKNLSEMAEAKEVEREETRP 497
Query: 533 KKDGDHWILNGEKSWVTTAVEGSAN 607
K + ++ + + + + + SAN
Sbjct: 498 KGESARYLEHADSNSDSEDLSSSAN 522
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 579 SRPPSRDPLISYSRPLTPSSSTK 647
S+PPS P SY+R L S S K
Sbjct: 3 SKPPSNTPKFSYARALASSQSNK 25
>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 631 RAQAQRNSLFPCPYGRRWRIQRTERGHNECQGR 729
+ + Q++S + CP+ R ++RT G +C G+
Sbjct: 28 KIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGK 60
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -2
Query: 669 GTRKQAIPLCLSSGSKVANMILADPSTAVVTQLFSPFRIQWSPSFFALVRI 517
G ++ + L S V +++ ++P+T VVTQ +P + W L+ I
Sbjct: 579 GEDRKTMTLPSLSDKLVYSILQSNPNTVVVTQSGTPIEMPWISEAHTLLHI 629
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 27.1 bits (57), Expect = 2.9
Identities = 28/118 (23%), Positives = 50/118 (42%)
Frame = +2
Query: 56 LNNLLSSSCVKALASQCRSFTSQLTEQQKEYQALSKEFADKYLKPNAAKHDLEGRFPFDV 235
L L +SS K LAS+ F+ QK+ + LS+ A L + H L D
Sbjct: 421 LEYLANSS--KGLASKSIEFSKNRGHSQKKRKTLSESQAGDTLMSSEESHQLYDSDVMDC 478
Query: 236 IKKLTATGLMGACVDEEYGGKGLDYLTLAVAVEELSRGCASTGMIASIHNFLYANLVN 409
A+ L + +D TL +++ ++ ++ S+HN L A++++
Sbjct: 479 CFSFLASILTHSIALPRLLRTKIDLCTLQISLSN-----PTSTVLISMHNLLLASILS 531
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 691 EYAIDVHRDKETSYSFVLELGVKGRE 614
E+ + V+RD TS SF+ +G++ E
Sbjct: 293 EFFLRVYRDDRTSVSFICPIGIQTHE 318
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 377 WMRSCQYWRSPGTAPPRRRPVSSSLDP 297
W + YW S T P R VS L+P
Sbjct: 2109 WSAALWYWGSYSTDKPNRMGVSGKLNP 2135
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 352 RQYWHDRIHSQLPVRELG-ERKGNSRTEGTVPEGLH*GLSRML 477
++YWH +IH LP + E+K T + + H L+R L
Sbjct: 594 QEYWHCKIHKLLPKEDASYEQKVVLLTLSLLSKNKHTSLARSL 636
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 648 PLCLSSGSKVANMILADPSTAVVTQLFSPFRIQW 547
P+ S S V N+I++D + +V Q+ +W
Sbjct: 581 PISFESLSAVGNLIISDSLSRIVRQILQNLYTEW 614
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 6.6
Identities = 21/90 (23%), Positives = 37/90 (41%)
Frame = +2
Query: 110 SFTSQLTEQQKEYQALSKEFADKYLKPNAAKHDLEGRFPFDVIKKLTATGLMGACVDEEY 289
S T+ + +LS D YL+PN ++ G P ++ +++
Sbjct: 159 SIALNTTKSEATRSSLSSSSFDSYLRPNVSRSRSSGNAP-PFLRSRSSSSYSINKKKGTS 217
Query: 290 GGKGLDYLTLAVAVEELSRGCASTGMIASI 379
GG+ +LT A LSR C+ + S+
Sbjct: 218 GGQATRHLTYA-----LSRTCSQSSNTTSL 242
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 79 LREGVSVPMQKLHESADGTTKRISSIVQGIRRQ 177
++EG S+ MQ++ D KR+ S +Q ++ +
Sbjct: 336 VQEGASLAMQRVQNKHDLEKKRLQSAIQPLQEE 368
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/51 (19%), Positives = 24/51 (47%)
Frame = +2
Query: 50 IRLNNLLSSSCVKALASQCRSFTSQLTEQQKEYQALSKEFADKYLKPNAAK 202
++L + C++ + C+ +L + Q+EY ++ E L+ + K
Sbjct: 3334 LKLEQKNAEECIQETIAACKDLDEKLLQLQEEYASMISEIHSMELQMDEVK 3384
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +2
Query: 38 ALKSIRLNNLLSSSC-----VKALASQCRSFTSQLTEQQKEYQALSKEFADKYLKPNAAK 202
AL++ + N +L S C + L + + + Q E+QA+S ++D L +AA
Sbjct: 89 ALQASKQNGILPSVCRLLIRLYLLWQKNPAIIEPMEGHQNEFQAVSSSWSDAELIASAAS 148
Query: 203 H 205
H
Sbjct: 149 H 149
>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 275 VDEEYGGKGLDYLTLAVAVEELSRGCASTGMIASIHN 385
+D +Y G+ +D + V+ L GC T + S H+
Sbjct: 236 LDHQYAGQIIDDEMHEIMVKPLPAGCRLTALFDSCHS 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,218,297
Number of Sequences: 5004
Number of extensions: 69466
Number of successful extensions: 216
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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