Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30k08
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141... 120 1e-27
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266... 99 2e-21
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 79 3e-15
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367... 57 1e-08
07_03_1669 + 28499143-28499409,28499915-28500055,28500528-285006... 44 1e-04
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22... 34 0.11
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 33 0.24
10_06_0050 - 10072226-10072606 32 0.56
06_02_0285 + 13789900-13790071,13790407-13790525,13790642-137907... 32 0.56
02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050 30 1.7
11_04_0476 + 18190600-18191259 30 2.3
11_01_0596 + 4755453-4755490,4755675-4756047,4757739-4758940,475... 30 2.3
07_03_1569 - 27792739-27794175 30 2.3
06_03_1248 + 28685911-28687719 30 2.3
02_05_0239 + 27101440-27101904 30 2.3
12_01_1001 - 10145663-10147006 29 5.2
04_01_0180 + 2034021-2034023,2034741-2035088 28 6.9
05_06_0174 - 26149663-26149885,26150353-26151701 28 9.2
>05_01_0195 -
1409820-1409966,1410304-1410360,1410774-1410828,
1410902-1411002,1411051-1411205,1411395-1411459,
1411545-1411595,1411817-1411893,1412153-1412262,
1412355-1412403,1412528-1412572,1412689-1412813,
1413087-1413228,1413336-1413446
Length = 429
Score = 120 bits (289), Expect = 1e-27
Identities = 72/226 (31%), Positives = 113/226 (50%), Gaps = 5/226 (2%)
Frame = +2
Query: 92 LASQCRSFTSQLT--EQQKEYQALSKEFADKYLKPNAAKHDLEGRFPFDV-IKKLTAT-G 259
LA + S S L + Q++++ +FA + + P+AA D FP DV + KL
Sbjct: 18 LARRLYSSASSLLFDDTQEQFKESVHKFAQETIAPHAAAIDASNHFPKDVNLWKLMGDFN 77
Query: 260 LMGACVDEEYGGKGLDYLTLAVAVEELSRGCASTGMIASIHNFLYANLVNEKGTPEQKEL 439
L G EEYGG GL Y+ +A+EE+SR S G+ H+ L N + G+P QK
Sbjct: 78 LHGLTAPEEYGGMGLGYMYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKLK 137
Query: 440 FLRDYTKGS-LGCFALSEPGAGTDVASIRTRAKKDGDHWILNGEKSWVTTAVEGSANIIF 616
+L G +G A+SEP +G+DV S++ +A+K +++NG K W T +++
Sbjct: 138 YLPKLISGEHVGALAMSEPNSGSDVVSMKCKAEKVDGGYVINGNKMWCTNGPSAQTLVVY 197
Query: 617 ATFDPELKHKGIACFLVPMDVDGVFRGRKEAIMSVRAVTSCALTLE 754
A D KGI F++ + G +K + +R +C L E
Sbjct: 198 AKTDIAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFE 243
>06_02_0283 +
13726047-13726090,13726160-13726266,13726515-13726621,
13726735-13726812,13734948-13735071,13735585-13735658,
13735742-13735801,13737561-13737670,13737806-13737965,
13738218-13738360,13738461-13738605,13738727-13738819,
13740070-13740186
Length = 453
Score = 99 bits (238), Expect = 2e-21
Identities = 69/229 (30%), Positives = 109/229 (47%), Gaps = 1/229 (0%)
Frame = +2
Query: 71 SSSCVKALASQCRSFTSQLTEQQKEYQALSKEFADKYLKPNAAKHDLEGRFPFDVIKKLT 250
++S A AS LTE++K+ Q ++F + + P +K + FPF +I K++
Sbjct: 43 AASTFPAAASNYCQLDELLTEEEKDLQIKVRQFMENEVAPIISKFWEKAEFPFHLIPKMS 102
Query: 251 ATGLMGACVDEEYGGKGLDYLTLAVAVEELSRGCASTGMIASIHNFLYANLVNEKGTPEQ 430
G+ G + + YG GL A+ E++R AS + + L + + G+ Q
Sbjct: 103 TLGIAGGTI-KGYGCPGLSGPACAMCFLEIARVDASIASFCLVQSCLAMVSIAQLGSEAQ 161
Query: 431 KELFLRDYTKGSLGC-FALSEPGAGTDVASIRTRAKKDGDHWILNGEKSWVTTAVEGSAN 607
KE +LR +K C +ALSEP G+D +S+ T A+K WILNG+K W S
Sbjct: 162 KEKYLRPLSKMQKVCVYALSEPNHGSDASSLNTTARKVPGGWILNGQKRW---PANSSFA 218
Query: 608 IIFATFDPELKHKGIACFLVPMDVDGVFRGRKEAIMSVRAVTSCALTLE 754
IF I F+V G+ + + MS+R V +C + LE
Sbjct: 219 DIFVVLACNTSTNQINGFIVNGGAPGLKISKIDNKMSLRVVQNCDILLE 267
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 79.4 bits (187), Expect = 3e-15
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 1/176 (0%)
Frame = +2
Query: 95 ASQCRSFTSQLTEQQKEYQALSKEFADKYLKPNAAKHDLEGRFPFDVIKKLTATGLMGAC 274
AS LT +++ + + +K + P A + + FPF I KL++ G+ G
Sbjct: 40 ASDYYQIDDLLTTEEQSIRKNVRAIMEKEIAPIMATYWEKAEFPFHAIPKLSSLGVAGGT 99
Query: 275 VDEEYGGKGLDYLTLAVAVEELSRGCASTGMIASIHNFLYANLVNEKGTPEQKELFLRDY 454
+ + YG GL A+ + E++R AS +H+ L + G+ QK+ +L
Sbjct: 100 I-KGYGCPGLSITASAITMAEIARVDASCSTFILVHSSLAMVTIALCGSEVQKQKYLPSL 158
Query: 455 TK-GSLGCFALSEPGAGTDVASIRTRAKKDGDHWILNGEKSWVTTAVEGSANIIFA 619
+ ++GC+AL+EP G+D +S+ T A K W ++G+K W+ + ++ A
Sbjct: 159 AQLTAVGCWALTEPNHGSDASSLITTATKVPGGWHIDGQKRWIGNSTFADVLVVLA 214
>05_01_0464 -
3670397-3670525,3671152-3671244,3671366-3671537,
3671626-3671702,3671819-3671978,3672104-3672213,
3672321-3672380,3672492-3672629,3672922-3672999,
3673227-3673333,3674506-3674598,3674708-3674723
Length = 410
Score = 57.2 bits (132), Expect = 1e-08
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 1/170 (0%)
Frame = +2
Query: 113 FTSQLTEQQKEYQALSKEFADKYLKPNAAKHDLEGRFPFDVIKKLTATGLMGACVDEEYG 292
F LT+++K + + ++ + P ++ + FPF I KL GL G +
Sbjct: 43 FDDLLTDEEKTLRKKVRGIMEREIAPIMTEYWEKAEFPFHAIPKLATLGLAGGTTKTDQD 102
Query: 293 GKGLDYLTLAVAVEELSRGCASTGMIASIHNFLYANLVNEKGTPEQKELFLRDYTK-GSL 469
L L L+ F ++ + G+ QK+ +L T+ ++
Sbjct: 103 NYFLSSLFLS---------------------FQFSVQIALCGSEAQKQKYLPSLTQFRTI 141
Query: 470 GCFALSEPGAGTDVASIRTRAKKDGDHWILNGEKSWVTTAVEGSANIIFA 619
GC+AL+EP G+D +S+RT A K W L+G+K W+ II A
Sbjct: 142 GCWALTEPDYGSDASSLRTAATKVPGGWHLDGQKRWIGNGTFADVLIILA 191
>07_03_1669 +
28499143-28499409,28499915-28500055,28500528-28500659,
28501185-28501373,28501503-28501580,28502267-28502386,
28502701-28502818,28503012-28503280,28503428-28503622,
28503737-28503879,28504096-28504180,28504270-28504479,
28504559-28504711,28504862-28504966,28505044-28505235
Length = 798
Score = 44.4 bits (100), Expect = 1e-04
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Frame = +2
Query: 416 GTPEQKELFLRDYTKGSLGC-FALSEPG-AGTDVASIRTRAKKDGDHWILNGEKSWVTTA 589
GT EQ++ +L +G + FA++EP A +D +I + GD +++NG K W + A
Sbjct: 509 GTKEQQKQWLVPLLEGKIRSGFAMTEPQVASSDATNIECSISRQGDFYVINGTKWWTSGA 568
Query: 590 VEGSANIIFATFDPEL---KHKGIACFLVPMDVDGV 688
++ I+ + KHK + LV + GV
Sbjct: 569 MDPRCQILVLMGKTDFSAPKHKQQSMILVDVKTPGV 604
>06_01_0023 +
227014-227166,227893-228001,228096-228157,228284-228493,
228609-228696,228774-228936,229037-229235,229456-229653,
229887-230018,230182-230302,230453-230563,230710-230779,
230880-231063,231137-231346
Length = 669
Score = 34.3 bits (75), Expect = 0.11
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Frame = +2
Query: 377 IHNFLYANLVNEKGTPEQKELFLR-DYTKGSLGCFALSEPGAGTDVASIRTRAKKD--GD 547
+H ++ + +GT EQ++ +L Y +GC+A +E G G++V + T A D D
Sbjct: 106 LHWGMFVPAIKGQGTEEQQKKWLPLAYRFQIIGCYAQTELGHGSNVQGLETTATFDPKTD 165
Query: 548 HWI-----LNGEKSWVTTAVEGSAN-IIFATFDPELKHKGIACFLVPM 673
++ L K W + S + +++A E K GI F+V +
Sbjct: 166 EFVIHSPTLTSSKWWPGGLGKASTHAVVYARLITEGKDYGIHGFIVQL 213
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 33.1 bits (72), Expect = 0.24
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Frame = +2
Query: 326 AVEELSRGC-ASTGMIASIHNFLYANLVNEKGTPEQKELFLRDYTKGSL-GCFALSEPGA 499
AV E + G S G+ + L+ + GT + ++ F GCFA++E
Sbjct: 137 AVMEAAGGADISLGVKLGVQYSLWGGSIINLGTKKHRDRFFDGIDNLDYPGCFAMTELHH 196
Query: 500 GTDVASIRTRAKKD--GDHWILN-----GEKSWV-TTAVEGSANIIFATFDPELKHK--- 646
G++V +++T A D D +I+N K W+ A+ G +FA L+ K
Sbjct: 197 GSNVQALQTTATFDPVTDEFIINTPNDGAIKWWIGNAALHGKFATVFARLILPLQGKGGD 256
Query: 647 ----GIACFLVPM-DVD 682
GI F+VP+ D+D
Sbjct: 257 PADMGIHAFIVPIRDLD 273
>10_06_0050 - 10072226-10072606
Length = 126
Score = 31.9 bits (69), Expect = 0.56
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Frame = +2
Query: 176 KYLKPNAAKHDLEGRFPFDVIKKLTATGLMGACVDEEYGGKGLDYLTLAVAVEELSRG-C 352
K + P HD GR P D +K L+ + + G D L + +L C
Sbjct: 29 KPVAPTPPSHDDHGRCPIDALKLRVCANLLNGLIGVKIGRGPDDCCPLLAGIADLDAAVC 88
Query: 353 ASTGMIASIHNFLYANL 403
T + A++ + NL
Sbjct: 89 LCTALKANVLGLINLNL 105
>06_02_0285 +
13789900-13790071,13790407-13790525,13790642-13790751,
13790887-13791046,13791407-13791483,13792299-13792470,
13792580-13792672,13793617-13793733
Length = 339
Score = 31.9 bits (69), Expect = 0.56
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +2
Query: 551 WILNGEKSWVTTAVEGSANIIFATFDPELKHKGIACFLVPMDVDGVFRGRKEAIMSVRAV 730
WILNG+K W GS +F + I F+V G+ + E S+R V
Sbjct: 102 WILNGQKRW---PANGSFADVFVVLACNTSNNQINGFIVNGGSPGLKISKIENKTSLRVV 158
Query: 731 TSCALTLE 754
+C + LE
Sbjct: 159 QNCDILLE 166
>02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050
Length = 709
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = -3
Query: 221 TVLPSHASLRSASSICRRIPWTMLDILFVVPSADS*SF 108
T+LPSHA L S++S+ R P T F P++D SF
Sbjct: 548 TLLPSHADLASSTSVLYRAPETRTAHAF-TPASDVYSF 584
>11_04_0476 + 18190600-18191259
Length = 219
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +1
Query: 493 WCR-HRRGQYTNEGEEGRRPLDSERREELGHDRRR 594
W R HRR NEGEE D E G DR R
Sbjct: 146 WLRAHRRAAAKNEGEEVADAEDERPEERAGSDRHR 180
>11_01_0596 +
4755453-4755490,4755675-4756047,4757739-4758940,
4759026-4759392
Length = 659
Score = 29.9 bits (64), Expect = 2.3
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Frame = -1
Query: 334 LHGDGQCQVV*TLATVFFVDAG----AHQACGCQLFYHIKREPSFQVMLRCVR--LQVFV 173
L GD ++ L DAG A QA Q F + R P FQV+L +R VF
Sbjct: 92 LRGDAAGRLFAPLVAAEPEDAGGEPVAVQALALQGFLRLCRSPEFQVLLNQIRGKAVVFT 151
Query: 172 GEFLGQCLIFFLLFRQLTREAS 107
G LG + + L +S
Sbjct: 152 GHSLGGAIAALVALHYLCTSSS 173
>07_03_1569 - 27792739-27794175
Length = 478
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 176 CRRIPWTMLDILFVVPSADS*S-FCIGTLTPSRKTTRA 66
CR + LD+L +PS+D F +G L+P TRA
Sbjct: 212 CRALEGEFLDVLAQIPSSDGDKLFAVGPLSPVLPDTRA 249
>06_03_1248 + 28685911-28687719
Length = 602
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +3
Query: 561 TARRAGSRP---PSRDPLISYSRPLTPSSSTKE*LVSLSLWTSMA 686
+A A SRP + P ++ SRP+TP K S S W++++
Sbjct: 95 SASAASSRPITPKDKAPAVATSRPITPKDKAKAAAASTSRWSAVS 139
>02_05_0239 + 27101440-27101904
Length = 154
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -3
Query: 506 LCLHQVH*GRSILESP*CSPSGTVPSVREFPFRSPSSRTGSCE-WMRSCQYWRSPGTAPP 330
+CL + GR++ P CS + V + SP R C W+ + +SPGT+PP
Sbjct: 93 ICLDGMEAGRAVRVLPGCSRAFHQDCVDRWLTISP--RCPVCNAWVTT----QSPGTSPP 146
Query: 329 RRRPVSSS 306
R +P +S
Sbjct: 147 RTKPALNS 154
>12_01_1001 - 10145663-10147006
Length = 447
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/91 (28%), Positives = 37/91 (40%)
Frame = -1
Query: 724 PDTHYGLFPSSEYAIDVHRDKETSYSFVLELGVKGREYDISGSLDGGRDPALLAVQNPMV 545
PD H G + S AIDV +G+ +D G +LLA N +V
Sbjct: 72 PDRHLGAYTSKVEAIDVLSSTPDI------VGIPS-GFDFLGCCLENGILSLLASTNGLV 124
Query: 544 AVLLRPRSYTGHVCACTRFTEGEAS*RALSV 452
+L P ++ H A T F A +A S+
Sbjct: 125 CILYTPTNFISHSRAPTLFIANPAMQKAQSI 155
>04_01_0180 + 2034021-2034023,2034741-2035088
Length = 116
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 53 RLNNLLS--SSCVKALASQCRSFTSQLTEQQKEYQALSKEFAD 175
+LN+ + + ++AL Q ++ T E+QK++ L KEFA+
Sbjct: 39 KLNDTIKELNDTIEALERQVQNLTRYKEEKQKQHANLQKEFAE 81
>05_06_0174 - 26149663-26149885,26150353-26151701
Length = 523
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 482 LSEPGAGTDVASIRTRAKKDGDHWILNGEKSWVT 583
++ A TDV S+ T ++DG W+ G VT
Sbjct: 421 IASVSAATDVLSVGTLFRRDGQLWLAGGRCLMVT 454
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,316,660
Number of Sequences: 37544
Number of extensions: 525677
Number of successful extensions: 1783
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1776
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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