Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30k08
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.76 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.76 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   1.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   7.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   7.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   7.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = +2

Query: 329  VEELSRGCASTGMIASIHNFLYANLVNEKGTPEQKELFLRDYTKGSLGCFALSEPGAGTD 508
            ++  + G   T      +NF   +   E+G  E +   LR YTK +L   A ++ G+G  
Sbjct: 1039 IQGFNVGYRETSSSNPSYNFSSVSGDGEEGGAELRLTGLRPYTKYTLVVQAYNQVGSGPL 1098

Query: 509  VASIRTRAKKD 541
               + T+  +D
Sbjct: 1099 SEPLLTQTMED 1109


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = +2

Query: 329  VEELSRGCASTGMIASIHNFLYANLVNEKGTPEQKELFLRDYTKGSLGCFALSEPGAGTD 508
            ++  + G   T      +NF   +   E+G  E +   LR YTK +L   A ++ G+G  
Sbjct: 1035 IQGFNVGYRETSSSNPSYNFSSVSGDGEEGGAELRLTGLRPYTKYTLVVQAYNQVGSGPL 1094

Query: 509  VASIRTRAKKD 541
               + T+  +D
Sbjct: 1095 SEPLLTQTMED 1105


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +2

Query: 383 NFLYANLVNEKGTPEQKELFLRDYTKGSLGCFALSEPGAGTDVASIRTRAKKDGDHWIL 559
           NF +    N   TPEQ ++ + ++ KG+      +      D   + TR     DH I+
Sbjct: 320 NFKFITDANSSSTPEQFKVIIDNWIKGTPQNNVPNWVMGNHDRVRVGTRYPGRADHMIM 378


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -2

Query: 582 VTQLFSPFRIQWSPSFFALVRIL 514
           VTQ+++   ++W+ S FA +R++
Sbjct: 58  VTQIWTDHHLKWNASEFAGIRVI 80


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -1

Query: 712 YGLFPSSEYAIDVHRDKETSYSFVLELGVKGREYDISGSLDGGRDPAL 569
           +G +    Y +D+    +T  S  +E+G+   +Y IS   D  + PA+
Sbjct: 163 FGSWTYDGYTVDLRHLAQTEDSNQIEVGIDLTDYYISVEWDIIKVPAV 210


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 236 IKKLTATGLMGACVDEEYGGKGLDYLTLAVAVEELSRGC 352
           I KLTA G++    D EY  +  +   L+      S+GC
Sbjct: 161 ITKLTAMGVLNNLHDPEYSARENELRALS---SLFSKGC 196


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 236 IKKLTATGLMGACVDEEYGGKGLDYLTLAVAVEELSRGC 352
           I KLTA G++    D EY  +  +   L+      S+GC
Sbjct: 161 ITKLTAMGVLNNLHDPEYSARENELRALS---SLFSKGC 196


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 236 IKKLTATGLMGACVDEEYGGKGLDYLTLAVAVEELSRGC 352
           I KLTA G++    D EY  +  +   L+      S+GC
Sbjct: 161 ITKLTAMGVLNNLHDPEYSARENELRALS---SLFSKGC 196


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 718 THYGLFPSSEYAIDVHRDKET 656
           T  GL PS++YAI V R K T
Sbjct: 481 TFKGLKPSTDYAIQV-RAKTT 500


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,149
Number of Sequences: 438
Number of extensions: 5144
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)