Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30k07
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0336 + 22121913-22122111,22122295-22122344,22122538-221226... 134 9e-32
10_01_0315 - 3454846-3455465,3455562-3455663,3455828-3455954,345... 129 2e-30
04_04_0116 + 22877296-22877482,22877578-22877627,22879057-228791... 115 3e-26
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447 104 6e-23
04_04_0115 + 22868554-22868749,22868863-22868912,22870009-228701... 103 1e-22
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 96 2e-20
07_03_0722 + 20946201-20947327,20949531-20950791 31 0.70
02_04_0314 - 21950400-21950639,21951384-21951680,21951791-219519... 30 2.1
03_01_0566 - 4184379-4184491,4184616-4184726,4184800-4184889,418... 29 2.8
10_08_0414 + 17755427-17756000,17756181-17756308,17756434-177566... 29 4.9
04_03_0780 - 19550106-19550809,19550982-19551003 29 4.9
12_02_1018 - 25344954-25344991,25345133-25345194,25345351-253454... 28 8.6
08_01_0066 - 455589-455687,455902-455976,456531-456677,457158-45... 28 8.6
01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953 28 8.6
>02_04_0336 +
22121913-22122111,22122295-22122344,22122538-22122661,
22122810-22122917,22123610-22124265
Length = 378
Score = 134 bits (323), Expect = 9e-32
Identities = 73/188 (38%), Positives = 103/188 (54%), Gaps = 6/188 (3%)
Frame = +3
Query: 171 FSVSVISYGATIQSIQVPDKYGITSDVVLGFDELDGYVNRNTPYLGTTVGRCANRIGGAK 350
FS+ V ++GATI S+ +PD G +DVVLG+D + YVN T Y G +GR ANRI A+
Sbjct: 46 FSIRVTNWGATIMSVILPDSKGNLADVVLGYDTVAEYVN-GTAYFGGLIGRVANRIANAR 104
Query: 351 FSIDGTTYQLANNIGKDHLHGGINGFNKANWN-----STVDGTKVIFSYLSKDGEEGYPG 515
F++DG TY+L N G + LHGG GF+K W + D ++ Y S DGE+G+PG
Sbjct: 105 FTLDGKTYRLFRNDGNNSLHGGHRGFSKVIWTVKEHVAGGDSPRITLYYHSFDGEQGFPG 164
Query: 516 DLITNITYEVTEDNALHVDF-MSXXXXXXXXXXXXHSYFNLAGHETGVQEIYNHIFVINA 692
DL +TYE+ L V + H+Y+NLAG +G + I+A
Sbjct: 165 DLDVFVTYELPRPYVLAVRMNATARGKATPVNLAHHAYWNLAGEGSGAASVLAETVRIHA 224
Query: 693 DKITETDS 716
+ T D+
Sbjct: 225 SRYTPVDA 232
>10_01_0315 -
3454846-3455465,3455562-3455663,3455828-3455954,
3456698-3456727,3456828-3456877,3457004-3457106
Length = 343
Score = 129 bits (312), Expect = 2e-30
Identities = 74/194 (38%), Positives = 103/194 (53%), Gaps = 14/194 (7%)
Frame = +3
Query: 174 SVSVISYGATIQSIQVPDKYGITSDVVLGFDELDGYVNRN----------TPYLGTTVGR 323
+ + ++GATI S+ VPD +G +DVVLGFD L+ Y+ +PY G VGR
Sbjct: 15 TAKIAAWGATITSLIVPDAHGNLADVVLGFDTLEPYMEYVGTGKGGQKGISPYFGCIVGR 74
Query: 324 CANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKANWN---STVDGTKVIFSYLSKD 494
ANRI KF+++G Y LA N G + LHGG+ GF+K W+ + + F Y SKD
Sbjct: 75 VANRIKEGKFTLNGVEYSLAINNGPNSLHGGLKGFDKVVWDVVERKSECPSITFQYHSKD 134
Query: 495 GEEGYPGDLITNITYEVTEDNALHVDFMS-XXXXXXXXXXXXHSYFNLAGHETGVQEIYN 671
GEEGYPGD+ TY + + L +D + H+Y+NLAGH +G + +
Sbjct: 135 GEEGYPGDVTVRATYSLPDSTTLRLDMEAVAENKATPINLAQHTYWNLAGHNSG--DTLD 192
Query: 672 HIFVINADKITETD 713
H I IT D
Sbjct: 193 HSIQIWGKHITPVD 206
>04_04_0116 +
22877296-22877482,22877578-22877627,22879057-22879180,
22879266-22879373,22879462-22880084
Length = 363
Score = 115 bits (277), Expect = 3e-26
Identities = 66/197 (33%), Positives = 100/197 (50%), Gaps = 6/197 (3%)
Frame = +3
Query: 132 ETVSKFTWRASDGFSVSVISYGATIQSIQVPDKYGITSDVVLGFDELDGYVNRNTPYLGT 311
+TV ++ R D FSV + ++GAT+ S+ +PD G +DVVLG D + YVN +T Y G
Sbjct: 30 KTVGEYVLRKGD-FSVKITNWGATMMSVVLPDSKGNLADVVLGLDTIAEYVN-DTNYFGP 87
Query: 312 TVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKANWN-----STVDGTKVIF 476
GR RI +F +DG Y N G++ +HGG GF+K W D +
Sbjct: 88 VTGRVGQRIARGRFVLDGKVYHTYINDGRNAIHGGHRGFSKVIWTVKEYVGGGDSPYITL 147
Query: 477 SYLSKDGEEGYPGDLITNITYEVTEDNALHVDF-MSXXXXXXXXXXXXHSYFNLAGHETG 653
Y S DGE+G+PGDL +TY+++ L + + H+Y+NL G G
Sbjct: 148 YYRSFDGEQGFPGDLDAYVTYQLSSPYVLALRMNATALNKATPVNFLQHTYWNLGGQGRG 207
Query: 654 VQEIYNHIFVINADKIT 704
++ H ++A + T
Sbjct: 208 --DVLGHTLQLSASRYT 222
>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
Length = 309
Score = 104 bits (250), Expect = 6e-23
Identities = 61/169 (36%), Positives = 86/169 (50%), Gaps = 7/169 (4%)
Frame = +3
Query: 234 GITSDVVLGFDELDGYVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHG 413
G DVVLG+ ++ YVN +T Y G VGR ANRI G +F++ G + N GK+ LHG
Sbjct: 5 GHIDDVVLGYKDIGSYVN-DTTYFGALVGRVANRIAGGRFTVKGHAFHTYKNDGKNTLHG 63
Query: 414 GINGFNKANWN----STVDGTKVIFSYLSKDGEEGYPGDLITNITYEVTEDNALHVDFMS 581
G GFN+ W+ +T + F Y S DGE+G+PG L +TY++ D + V +
Sbjct: 64 GHRGFNQVFWSVRERATGHFPYITFYYRSYDGEQGFPGALDVLVTYKIDGDYSFSVTMYA 123
Query: 582 ---XXXXXXXXXXXXHSYFNLAGHETGVQEIYNHIFVINADKITETDSG 719
H+Y+NL GH G I +H I A +T +G
Sbjct: 124 RPVDDGKPTPVNLAQHTYWNLRGHGNGT--ILDHSVQIFASAVTPVGAG 170
>04_04_0115 +
22868554-22868749,22868863-22868912,22870009-22870195,
22870226-22870333,22872501-22873165
Length = 401
Score = 103 bits (248), Expect = 1e-22
Identities = 76/229 (33%), Positives = 104/229 (45%), Gaps = 27/229 (11%)
Frame = +3
Query: 111 DFGQHHGETVSKFTWRASDGFSVSVISYGATIQSIQVPDKYGITSDVVLGFDELDGYVNR 290
D + TV + R D FS+ V ++GA I S+ +PD G DVVLG+D + YVN
Sbjct: 26 DAAERKATTVGVYELRKGD-FSIRVTNWGAVIMSVVLPDSRGKLDDVVLGYDTIAEYVNS 84
Query: 291 NTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHG------------------- 413
+T Y G VGR ANRI A+F +DG Y L N GK+ LHG
Sbjct: 85 ST-YFGALVGRVANRIAKARFVLDGKAYHLYPNDGKNTLHGILEKFPEVQEIHGAWFIST 143
Query: 414 --GINGFNKANWN-----STVDGTKVIFSYLSKDGEEGYPGDLITNITYEVTEDNALHVD 572
G GF+ W D + Y S DGE+G+PG L +TY+++ L V
Sbjct: 144 NSGHRGFSNVTWTVKEHVGGGDAPYITLYYHSFDGEQGFPGALDVYVTYQLSGPYVLSVH 203
Query: 573 F-MSXXXXXXXXXXXXHSYFNLAGHETGVQEIYNHIFVINADKITETDS 716
+ HSY+NL G TG +I + + A + T D+
Sbjct: 204 MNATAAGKATPVNLAQHSYWNLGG--TGSGDILGNTVQLFASRYTPVDA 250
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 96.3 bits (229), Expect = 2e-20
Identities = 53/151 (35%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Frame = +3
Query: 276 GYVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTV 455
G N +PY G VGR ANRI KF+++ Y LA N + LHGG GF+K W
Sbjct: 198 GVPNGTSPYFGCIVGRVANRIKDGKFTLNDKQYSLAINNPPNTLHGGFKGFDKIIWEVAE 257
Query: 456 ----DGTKVIFSYLSKDGEEGYPGDLITNITYEVTEDNALHVDFMS-XXXXXXXXXXXXH 620
+ + F Y SKDGEEG+PGD+ Y + L ++ + H
Sbjct: 258 YVKGENPSITFKYYSKDGEEGFPGDVSVTARYSILASTTLKLEMEAIPLNKATPISLAQH 317
Query: 621 SYFNLAGHETGVQEIYNHIFVINADKITETD 713
+Y+NLAGH +G ++ H I +IT D
Sbjct: 318 TYWNLAGHNSG--DVLAHTVQILGSQITPVD 346
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +3
Query: 183 VISYGATIQSIQVPDKYGITSDVVLGFDELDGY 281
+ + GAT+ S+ VPD G+ DVVLGFD LD Y
Sbjct: 122 ITNVGATVTSLLVPDNNGVLGDVVLGFDSLDPY 154
>07_03_0722 + 20946201-20947327,20949531-20950791
Length = 795
Score = 31.5 bits (68), Expect = 0.70
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -3
Query: 677 DMVVDLLDTSFVASQIKIRMVCQIYNGLFSCRRHKVDMQGIVLGNFISNVSNKITRVSFF 498
D+VV++L V S + + VC+ + L + R H+ + + G F ++S + S
Sbjct: 436 DLVVEILRRLPVRSVCRFKRVCRSWRNLIADREHRKKLPQTLSGFFYKSISGERCPCS-- 493
Query: 497 AVL**ITKYHFSTVNG-GIPI 438
+HF+ V+G G+P+
Sbjct: 494 -------AHHFTNVSGKGVPL 507
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = -3
Query: 677 DMVVDLLDTSFVASQIKIRMVCQIYNGLFSCRRHKVDMQGIVLGNFISNVSNKITRVSFF 498
D+VV++L V S + + VC+ + L + R H+ + + G F + S + S
Sbjct: 18 DLVVEILRRLPVRSVCRFKRVCRSWRNLIADREHRKKLPQTLSGFFYKSSSGERCPCS-- 75
Query: 497 AVL**ITKYHFSTVNG-GIPI 438
+HF+ V+G G+P+
Sbjct: 76 -------AHHFTNVSGKGVPL 89
>02_04_0314 -
21950400-21950639,21951384-21951680,21951791-21951920,
21952377-21952699,21953385-21953606,21953693-21954089,
21954488-21954540
Length = 553
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = -1
Query: 316 TVVPKY-GVFLFTYPSSSSKPRTTSLVIPYLSGT*IDCMVAPY--EMTDTEKPSDALHVN 146
TV+PK V YP++ S T S+++P +S + C+ + E DTE+ D+
Sbjct: 76 TVLPKSTSVRGQDYPTADSVLPTESIIVPEISNAGLKCVADMFSDEDKDTEQDLDSPTEG 135
Query: 145 FETVS 131
F ++S
Sbjct: 136 FSSIS 140
>03_01_0566 -
4184379-4184491,4184616-4184726,4184800-4184889,
4184996-4185113
Length = 143
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 81 IINMVTLNVEDFGQHHGETVSKFTWR 158
I ++VTL D QHHG++ KFT R
Sbjct: 82 IRSLVTLAFADLLQHHGQSARKFTTR 107
>10_08_0414 +
17755427-17756000,17756181-17756308,17756434-17756694,
17756774-17757036,17758662-17759019
Length = 527
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -1
Query: 367 VPSMLNFAPPILLAQRPTVVPKYGVFLFTYPSSSSK---PRTTSLVIPYLSGT 218
+ S ++F P LL T +G LF PS+ K PR SL++ +LS +
Sbjct: 26 IQSPMDFGPLNLLPTTTTASSDFGRILFHSPSAVLKPQAPRDISLLLSFLSAS 78
>04_03_0780 - 19550106-19550809,19550982-19551003
Length = 241
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 216 QVPDKYGITSDVVLGFDELDGYVNRNTPYLGTTVGRCANR 335
+V DK G+T +LGFD G + TT+GR + R
Sbjct: 66 KVLDKRGLTMWNLLGFDTKAGIATDRPLIVRTTIGRASKR 105
>12_02_1018 -
25344954-25344991,25345133-25345194,25345351-25345483,
25346119-25346182
Length = 98
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 414 GINGFNKANWNSTVDGTKVIFSYLSKDGEEGYPGDL 521
G+NG N++ ++G++ + +Y KDG+ GD+
Sbjct: 28 GVNGMNESKIADLLNGSEYVPTYEDKDGDWMLVGDV 63
>08_01_0066 -
455589-455687,455902-455976,456531-456677,457158-457292,
457380-457508,457719-457814,458212-458403
Length = 290
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -1
Query: 346 APPILLAQRPTVVPKYGVFLFTYPSSSSKPRTTS 245
+PP+L A+RPTV + G+FL P++S R S
Sbjct: 12 SPPVLSAERPTV--RGGLFLPPSPATSRSLRLQS 43
>01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953
Length = 946
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/74 (28%), Positives = 26/74 (35%)
Frame = +3
Query: 285 NRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTVDGT 464
N NTP G T G A + Q A + L G GF K DGT
Sbjct: 557 NANTPGGGATPGMAAAASSSPSYRFPFAALQDATGNFDEGLVIGEGGFGKVYAAVLQDGT 616
Query: 465 KVIFSYLSKDGEEG 506
KV + + +G
Sbjct: 617 KVAVKRANPESRQG 630
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,039,456
Number of Sequences: 37544
Number of extensions: 436395
Number of successful extensions: 957
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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