Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30k07
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical ...   111   4e-25
AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical...   111   4e-25

>AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical
           protein C01B4.6 protein.
          Length = 330

 Score =  111 bits (268), Expect = 4e-25
 Identities = 59/183 (32%), Positives = 92/183 (50%), Gaps = 1/183 (0%)
 Frame = +3

Query: 168 GFSVSVISYGATIQSIQVPDKYGITSDVVLGFDELDGYVNRNTPYLGTTVGRCANRIGGA 347
           G + +++ +GAT+  +  PDK G   D+VLGFD +D +  ++   +G TVGR ANRI  +
Sbjct: 13  GLTATLLPFGATLAKLTFPDKNGKNQDLVLGFDTIDEF-EKDAASIGKTVGRVANRIKNS 71

Query: 348 KFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTVDGTK-VIFSYLSKDGEEGYPGDLI 524
               DG  Y +  N G  +LHGG NG     W       + V FS  + + ++G PGD  
Sbjct: 72  TLHFDGKQYTMTPNNGPHYLHGGPNGLGYRKWEVVRHAPESVSFSVRANEQDDGLPGDAK 131

Query: 525 TNITYEVTEDNALHVDFMSXXXXXXXXXXXXHSYFNLAGHETGVQEIYNHIFVINADKIT 704
            ++TY V + N L ++  +            H+Y+NL G +T    +  H   + AD+  
Sbjct: 132 IDVTYTVNDRNQLIIEHHATCDTPGLLALTNHAYWNLDGSDT----VAEHFLEMEADEFV 187

Query: 705 ETD 713
           E D
Sbjct: 188 EVD 190


>AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical
           protein Y19D10A.16 protein.
          Length = 330

 Score =  111 bits (268), Expect = 4e-25
 Identities = 59/183 (32%), Positives = 92/183 (50%), Gaps = 1/183 (0%)
 Frame = +3

Query: 168 GFSVSVISYGATIQSIQVPDKYGITSDVVLGFDELDGYVNRNTPYLGTTVGRCANRIGGA 347
           G + +++ +GAT+  +  PDK G   D+VLGFD +D +  ++   +G TVGR ANRI  +
Sbjct: 13  GLTATLLPFGATLAKLTFPDKNGKNQDLVLGFDTIDEF-EKDAASIGKTVGRVANRIKNS 71

Query: 348 KFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTVDGTK-VIFSYLSKDGEEGYPGDLI 524
               DG  Y +  N G  +LHGG NG     W       + V FS  + + ++G PGD  
Sbjct: 72  TLHFDGKQYTMTPNNGPHYLHGGPNGLGYRKWEVVRHAPESVSFSVRANEQDDGLPGDAK 131

Query: 525 TNITYEVTEDNALHVDFMSXXXXXXXXXXXXHSYFNLAGHETGVQEIYNHIFVINADKIT 704
            ++TY V + N L ++  +            H+Y+NL G +T    +  H   + AD+  
Sbjct: 132 IDVTYTVNDRNQLIIEHHATCDTPGLLALTNHAYWNLDGSDT----VAEHFLEMEADEFV 187

Query: 705 ETD 713
           E D
Sbjct: 188 EVD 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,989,805
Number of Sequences: 27780
Number of extensions: 375446
Number of successful extensions: 947
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)