Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30k06
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    27   3.4  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   6.0  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   6.0  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    25   7.9  

>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 285 NCLLRGLIIQYQITLRTVRELS*KSRFFQTKGVLEYIDNL 166
           +CL R  +IQYQI+   ++++    +   T  +LEY+ +L
Sbjct: 431 DCLGRTNVIQYQISRLVLKDIFFNLQIGVTFNILEYLRHL 470


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +1

Query: 82   VPISVLGRTLTHEHLAMTFTHFYREPPKQIVDVFENPFCLEKSGFLRQFPYSSKGNLVLN 261
            + + VLG   +  H  +  +H  R  PKQ +++   P  L    F  + P   KG+ V  
Sbjct: 921  IRVRVLGIHDSRNHKFLPISH--RVSPKQFLELSVRPSILNMEPFSMKEPQFKKGDEVTG 978

Query: 262  --DQAAKEAV 285
              +  +KE V
Sbjct: 979  FVNNVSKECV 988


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 360 PIKTDRRIFHYCTSTELLVRYNIIYNCLL 274
           P K  R+  H C S+  +++Y  I  CL+
Sbjct: 31  PCKLTRKFHHACPSSSKVLKYFRITGCLI 59


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 97  RHLSAPAPTQFLLLKSFYSITLNTS 23
           +HL A A + FLL  +FY + LN S
Sbjct: 335 KHLLATAVSWFLLDIAFYGVNLNQS 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,663
Number of Sequences: 5004
Number of extensions: 62839
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)