Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30k06
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0737 + 6211149-6211466,6212022-6212183,6212290-6213101,621...    30   2.0  
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962...    29   2.7  
10_08_0389 + 17465328-17465712,17465855-17465908,17466061-17468111     29   3.6  
05_03_0614 - 16206005-16206586,16207585-16207608,16209746-162098...    28   6.2  
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494...    28   6.2  
07_03_1204 + 24855052-24855210,24855411-24855974,24856157-248562...    28   8.3  

>11_01_0737 +
           6211149-6211466,6212022-6212183,6212290-6213101,
           6213188-6213395,6214157-6214364,6214752-6215206,
           6215585-6216011,6216391-6216471,6216571-6216761,
           6216855-6216998
          Length = 1001

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +1

Query: 535 KAGFMGEIASVWPLREFERRAIVAAGEL-----QPQVGCGVSFHPHRAIEAPFE 681
           +AG    IA V+P RE ++  I  + +L      P VGC + F P    +AP E
Sbjct: 145 EAGRNFVIAKVFPSREVQKNGIKLSWDLACSLGNPSVGCSLFFSPLYTSQAPKE 198


>06_03_0138 +
           17093196-17093325,17095704-17095804,17096224-17096292,
           17096403-17097650,17097763-17097871,17099459-17099655,
           17099732-17099842,17099927-17100079
          Length = 705

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 674 GASMAR*GWKLTPQPTCGCSSPAATMALRSNSLNGQT-LAISPMNPAFTLGSS 519
           GAS+    W  +P P+    +PA+T      S NGQ+ + + P  P +  G+S
Sbjct: 142 GASLP--SWNSSPMPSSANGAPASTTTADPGSHNGQSGIQMPPPLPQYQPGAS 192


>10_08_0389 + 17465328-17465712,17465855-17465908,17466061-17468111
          Length = 829

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 306 VRYNIIYNCL-LRGLIIQYQITLRTVRELS*KSRFF 202
           V YN++ N L L+G +IQ +I L ++RE   K R F
Sbjct: 694 VTYNLLINVLCLKGKVIQAEILLESLRENGIKLRKF 729


>05_03_0614 -
           16206005-16206586,16207585-16207608,16209746-16209879,
           16210703-16210832
          Length = 289

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 644 LTPQPTCGCSSPAATMALRSNSLNGQTLA 558
           L+P  +  CSS A+T+  RS SL   T A
Sbjct: 148 LSPMSSVSCSSTASTLVTRSCSLTSTTFA 176


>01_05_0653 -
           23948911-23948937,23949031-23949141,23949361-23949441,
           23949865-23949984,23950088-23950252,23950344-23950493,
           23950565-23950674,23951401-23951518,23951597-23951827,
           23952345-23952524,23953639-23953908,23954930-23954979,
           23955213-23955288,23955396-23955483,23956010-23956101,
           23956200-23956529,23957484-23957593,23957810-23957907,
           23959538-23959566
          Length = 811

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 427 YVEDVQAKANLSKTTEQMYHH 489
           Y+E  QAKA   K  +Q YHH
Sbjct: 77  YIETQQAKAEHQKQQQQQYHH 97


>07_03_1204 +
           24855052-24855210,24855411-24855974,24856157-24856225,
           24856304-24856426,24856733-24856864,24857143-24857266,
           24857547-24857614,24857849-24857991,24858615-24858722,
           24858826-24858901,24859442-24859578,24859660-24859819,
           24859901-24860080,24860159-24860275,24860540-24860695,
           24861209-24861379,24861479-24861591,24861669-24861792,
           24861961-24862056,24862139-24862201,24862299-24862364
          Length = 982

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 361 DVNFYKLVSEKSDVNIVAGTGFYVEDVQAKANLSKTTEQMYHHMLTELTTGF 516
           D+ +Y    + +D+N++ G   ++     K N  KTT Q     +T    GF
Sbjct: 752 DLKYYTKTRDYTDINVLGGEFAHLPPSMCKTNGVKTTAQANDCKVTTKWFGF 803


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,813,890
Number of Sequences: 37544
Number of extensions: 432757
Number of successful extensions: 1012
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)