Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30k06
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.6  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   8.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.6  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 14/68 (20%), Positives = 30/68 (44%)
 Frame = -3

Query: 345 RRIFHYCTSTELLVRYNIIYNCLLRGLIIQYQITLRTVRELS*KSRFFQTKGVLEYIDNL 166
           +++   C   ++   ++ +YN LL  +   Y +  R + E   +S+F    G   Y   +
Sbjct: 661 KQVILKCNIQDMSFLFSQLYNALLILISTVYAVKTRKIPENFNESKFI---GFTMYTTCI 717

Query: 165 LWWLSVEV 142
           +W   V +
Sbjct: 718 IWLAFVPI 725


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 14/68 (20%), Positives = 30/68 (44%)
 Frame = -3

Query: 345 RRIFHYCTSTELLVRYNIIYNCLLRGLIIQYQITLRTVRELS*KSRFFQTKGVLEYIDNL 166
           +++   C   ++   ++ +YN LL  +   Y +  R + E   +S+F    G   Y   +
Sbjct: 751 KQVILKCNIQDMSFLFSQLYNALLILISTVYAVKTRKIPENFNESKFI---GFTMYTTCI 807

Query: 165 LWWLSVEV 142
           +W   V +
Sbjct: 808 IWLAFVPI 815


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 411 DYVYVALFRYQLVKVYIP 358
           D ++   F Y L+++YIP
Sbjct: 234 DLLFKREFSYYLIQIYIP 251


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 411 DYVYVALFRYQLVKVYIP 358
           D ++   F Y L+++YIP
Sbjct: 234 DLLFKREFSYYLIQIYIP 251


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 549 HEPSLHTRFLKKPCCEFSQHV 487
           H  ++HTR  K+P C   + V
Sbjct: 21  HIQNVHTRPSKEPICNICKRV 41


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 364 HPDQDRPSNFPLL 326
           H D+++PS +PLL
Sbjct: 61  HDDREQPSVYPLL 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,544
Number of Sequences: 438
Number of extensions: 4223
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)