Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30k05
         (584 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical pr...    52   4e-07
AF026214-2|AAB71314.2|  446|Caenorhabditis elegans Hypothetical ...    33   0.20 
Z81124-7|CAB03376.1|  334|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical
           protein ZK822.5a protein.
          Length = 577

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
 Frame = +3

Query: 183 FXFGGKNMSVISXTLALIASHITXIXLLGXPVEIYLRGTQYWASAXXLIIXTFXTAVIYL 362
           +  GG+ +  +   L+L+ + ++ I +LG P E++ RG Q W +    +  +  T  ++L
Sbjct: 48  YLMGGRQLPPLPVALSLLTTFLSGILMLGVPAEMFQRGAQIWLNFVIGVASSIVTCFVFL 107

Query: 363 PVXXKLQLXSSFXYLEIRF-STXXXTIAAVMFXXSKLMXLPIXPYVPLTA 509
           PV  K++      Y   R+ S     + +++F    ++ + +  Y P  A
Sbjct: 108 PVFHKMKSTCLHEYFIHRYNSILIRRLFSLLFLLFTIVYMSVVLYAPSVA 157


>AF026214-2|AAB71314.2|  446|Caenorhabditis elegans Hypothetical
           protein F52H2.4 protein.
          Length = 446

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +3

Query: 348 AVIYLPVXXKLQLXSSFXYLEIRFSTXXXTIAAVMFXXSKLMXLPIXPYVPLTAFRLVTD 527
           A ++LPV  +L+L + + Y E RF      +   +F    ++   +  Y P  A   +T+
Sbjct: 17  AFVFLPVLYRLKLTTIYEYFERRFDYKCRFVTTSLFCVQMILYNSVALYAPSLAIASITN 76


>Z81124-7|CAB03376.1|  334|Caenorhabditis elegans Hypothetical
           protein T21B4.9 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +3

Query: 156 NRKYNTVAGFXFGGKNMSVISXTLALIASHITXIXLLGX--PVEIYLRGTQYWASAXXLI 329
           NR + T AG+    +++ VIS  +  +  +           PV   L    +W S   ++
Sbjct: 19  NRYFATKAGYTNTCRSIGVISLPIHFLTGYCILFKTPEEMRPVRNSLINLWFWCSLSQIM 78

Query: 330 IXTFXTAVIYLP 365
           +  F T   YLP
Sbjct: 79  VSFFFTPFYYLP 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,306,978
Number of Sequences: 27780
Number of extensions: 117983
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)