Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30j22
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0201 - 20869057-20869361,20869506-20869922,20870184-20870544     31   0.62 

>02_04_0201 - 20869057-20869361,20869506-20869922,20870184-20870544
          Length = 360

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
 Frame = +2

Query: 68  YLHSIKDL--CTSDYSSQED*KVEKMNVLTTLSKVKNKQRLYIGLPQELCFIIGL--IEK 235
           YL ++K L  C +  SS     +E +  LT LS  KN+   +I  PQEL +++ L  +  
Sbjct: 196 YLVNLKGLRLCDNMLSSSIPNNLENLTKLTVLSLYKNQLSGHI--PQELGYLVNLKNLSL 253

Query: 236 HTNVSEQNIILCLMRITLNRTFSQLADDFDLSVSQ 340
           ++N    +I  CL  +T     +   + F   +SQ
Sbjct: 254 YSNNFTGSIPNCLGNLTKLTDLALFENQFSGHISQ 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,589,324
Number of Sequences: 37544
Number of extensions: 251792
Number of successful extensions: 405
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)