Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30j22
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   2.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   2.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   2.6  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   4.6  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   4.6  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   4.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   4.6  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
 Frame = +2

Query: 62  SLYLHSIKDLCTSDYSSQED*KVEKMNVLTTLSKVKNKQR---LYIGLPQELCFIIGLIE 232
           SLY  + +   TSDY   +       N+L T S  K   +   L+ GL  +    +G   
Sbjct: 274 SLYYVNTEQFRTSDYQQNDIHYEGVQNILDTQSSAKVVSKSGVLFFGLVGDSA--LGCWN 331

Query: 233 KHTNVSEQNI 262
           +H  +   NI
Sbjct: 332 EHRTLERHNI 341


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
 Frame = +2

Query: 62  SLYLHSIKDLCTSDYSSQED*KVEKMNVLTTLSKVKNKQR---LYIGLPQELCFIIGLIE 232
           SLY  + +   TSDY   +       N+L T S  K   +   L+ GL  +    +G   
Sbjct: 274 SLYYVNTEQFRTSDYQQNDIHYEGVQNILDTQSSAKVVSKSGVLFFGLVGDSA--LGCWN 331

Query: 233 KHTNVSEQNI 262
           +H  +   NI
Sbjct: 332 EHRTLERHNI 341


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
 Frame = +2

Query: 62  SLYLHSIKDLCTSDYSSQED*KVEKMNVLTTLSKVKNKQR---LYIGLPQELCFIIGLIE 232
           SLY  + +   TSDY   +       N+L T S  K   +   L+ GL  +    +G   
Sbjct: 274 SLYYVNTEQFRTSDYQQNDIHYEGVQNILDTQSSAKVVSKSGVLFFGLVGDSA--LGCWN 331

Query: 233 KHTNVSEQNI 262
           +H  +   NI
Sbjct: 332 EHRTLERHNI 341


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 201 CGRPIYKRCLFFTLDK 154
           CG     RCL +T+DK
Sbjct: 133 CGERTEGRCLHYTVDK 148


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 201 CGRPIYKRCLFFTLDK 154
           CG     RCL +T+DK
Sbjct: 138 CGERTEGRCLHYTVDK 153


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 201 CGRPIYKRCLFFTLDK 154
           CG     RCL +T+DK
Sbjct: 138 CGERTEGRCLHYTVDK 153


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 340 SKQYIFQQTPRNCKCNITPC*TIKKTIQ 423
           SK+ +   TP+  KC++     IKK ++
Sbjct: 270 SKKKLSPATPKGSKCSMITTPEIKKEVE 297


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 395 GVILHLQFLGV 363
           GV++HLQ LGV
Sbjct: 30  GVLIHLQILGV 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,687
Number of Sequences: 438
Number of extensions: 3579
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)