Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30j17
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    28   0.53 
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   3.7  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    25   4.9  
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    24   8.6  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    24   8.6  

>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 259 KRREYPRTNRTXQPVFYAQIFLE*LWKSCGHY*TY*QSKFXIDV 390
           K   Y  + R  Q V    ++   LWK+ GH+  Y ++ F  D+
Sbjct: 326 KYMRYQYSKRGYQEVITPNMYNVNLWKTSGHWNNYSENMFSFDI 369


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 193 HFTSHXVNFFRVQGLRIFDC 134
           H+TSH VN    +  ++FDC
Sbjct: 704 HYTSHLVNTIMRKVSKVFDC 723


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 145 IFDCRIQICXXXVFFTRNRSYANFTFGRVS 56
           I  C +      +F+T+N +Y    F +VS
Sbjct: 179 IIGCGVNFINRTIFYTKNGAYLGVAFKKVS 208


>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 147 RRPWTRKKFTXWLVKWKIXLRNIGRRLRKICYM 245
           RR  ++K    + V W +  R +G  L + CY+
Sbjct: 127 RRVRSKKALGHFPVVWGVVCRALGLSLERTCYL 159


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 220 LPMFRXWIFHFTSHXVNFFRVQG 152
           LP+ +  +FH TSH +  +R QG
Sbjct: 792 LPVHQLHMFHDTSHLLMDYRPQG 814


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,617,867
Number of Sequences: 5004
Number of extensions: 29422
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)