Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30j14
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    29   0.88 
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    26   4.7  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    26   6.2  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   8.2  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 334 LL*YRAVEDHFDVLTILHG*TFYIIRVKVL*MYYEVITFDISTTVNNVLC 185
           LL YR  ED   +LTI+   T +I R   +        F+I++ +N   C
Sbjct: 750 LLCYRRAEDDSRILTIIESWTIFISRFSSVISRCSFTDFEINSILNFFFC 799


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 398 NNSPVQTPPEVTIENVKEVVSLPRKFFRSPTTANEVK 508
           N+S  +   +V  ENV+    +PRK  R P   N++K
Sbjct: 306 NDSWSRQTNQVETENVENEAGVPRKRGRPPGARNKIK 342


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
 Frame = -1

Query: 504 TSLAVVGDLKNFLGKDTTSFTFSMVTSGGV*TGELFDREMNWSLSQSFTLNF*SEDAFCN 325
           TSL ++  +++    +   +T S++   GV       +   W LS +F +   + D F +
Sbjct: 324 TSLDLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILVAACDTFRS 383

Query: 324 -----IGQSRTTLTSLQFCTVKLFISSV*KSFRCIMKS 226
                +G     L SL+  +++LF     K    ++K+
Sbjct: 384 GAIEQLGVHVKNLQSLKGSSIELFAQGYGKDSSFVVKN 421


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 20/72 (27%), Positives = 29/72 (40%)
 Frame = +2

Query: 359 VKDCDKLQFISLSNNSPVQTPPEVTIENVKEVVSLPRKFFRSPTTANEVKCSGTASLKSI 538
           +KD +K   +  SNN  + TP +     VK + S    F +S    N      T+  K +
Sbjct: 444 IKDKNKDSTVRASNNENIPTPDKQASPFVKNLSSTSSPFSQSSAFGNFKFGQATSFDKGL 503

Query: 539 SVVDSYIKSINT 574
           S   S     NT
Sbjct: 504 STDASSGAKSNT 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,565
Number of Sequences: 5004
Number of extensions: 55816
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)