Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30j14
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.54 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.8  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   3.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.8  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +2

Query: 458 SLPRKFFRS--PTTANEVKCSGTASLKSISVVDSYIKSINTRAIYNVT 595
           S P  FF S  PT+      +G + L     ++ YI  +N  A  N+T
Sbjct: 94  SSPSSFFSSVSPTSLGSENYTGISDLFVFDDLNDYINRLNYSAFVNLT 141


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 162 FWQLVKFILTPSELIRRAYINNMLRFVII 76
           FWQ   ++L  S    RAY++ M  +V +
Sbjct: 101 FWQQYPWVLGVSLCKIRAYVSEMSSYVSV 129


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 245 KDFYTDDIKSLTVQNCKDVKVVLDC 319
           KDFY  D K+  +      K+V DC
Sbjct: 46  KDFYRQDTKNNLLNAYVRFKLVTDC 70


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 587 CKWPLCLLILYSYRRHL 537
           CKWP C +I   Y+  L
Sbjct: 283 CKWPGCEVICEDYQAFL 299


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,330
Number of Sequences: 438
Number of extensions: 3943
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)