Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30j04
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    31   0.63 
Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical pr...    31   0.63 
Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical pr...    31   0.63 
U23514-10|AAK95879.1|  301|Caenorhabditis elegans Long protein 1...    30   1.1  
AF022979-6|ABD94088.1|   94|Caenorhabditis elegans Hypothetical ...    29   2.5  
U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U23514-9|AAC46538.1|  312|Caenorhabditis elegans Long protein 1,...    28   4.4  
Z68316-7|CAM35840.1|  310|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z71185-6|CAI46563.1|  286|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical protein
            K04H4.2c protein.
          Length = 1446

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +1

Query: 190  GGVCRKVGNCPTGTEV---TIKGLCP 258
            G +C  + +CP G EV   TI GLCP
Sbjct: 1041 GNICCPINSCPNGGEVLGPTINGLCP 1066


>Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical
           protein K04H4.2b protein.
          Length = 788

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +1

Query: 190 GGVCRKVGNCPTGTEV---TIKGLCP 258
           G +C  + +CP G EV   TI GLCP
Sbjct: 383 GNICCPINSCPNGGEVLGPTINGLCP 408


>Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical
           protein K04H4.2a protein.
          Length = 628

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +1

Query: 190 GGVCRKVGNCPTGTEV---TIKGLCP 258
           G +C  + +CP G EV   TI GLCP
Sbjct: 383 GNICCPINSCPNGGEVLGPTINGLCP 408


>U23514-10|AAK95879.1|  301|Caenorhabditis elegans Long protein 1,
           isoform b protein.
          Length = 301

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 163 NEIPCMTYAGGVCRKVGNCPTGTEVTIKGLC 255
           N +P  T+A G   K  NCP       +GLC
Sbjct: 214 NTMPAFTWASGDNGKCSNCPANAPACYQGLC 244


>AF022979-6|ABD94088.1|   94|Caenorhabditis elegans Hypothetical
           protein T02B11.8 protein.
          Length = 94

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
 Frame = +1

Query: 145 CCDAEHNEIPCMTYAGGVCRKVGN--CPTGTEVTIKGLC 255
           CC   + +  C  + GG C    N  CP G   T  G C
Sbjct: 40  CCPIGNEQYGCCPFTGGTCCPGTNHCCPPGFSCTTIGTC 78


>U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical
           protein C50E3.9 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = -1

Query: 443 TCFINRILTCKEHILY--NNNNMTFKLLRIHSIGPCCSLLIKELA*DLGFRTDRQHSTSS 270
           T  I RI  CK   L    N N+   + R+  I PC SL+I  L   +  +     + + 
Sbjct: 240 TSQIERIFQCKFGFLDFGKNENIQMIINRVTLIFPCVSLIIGYLIFRMSLKKRTSGAANH 299

Query: 269 SCCKGQ--SPFIVTSV 228
           S CK +   P  VT++
Sbjct: 300 SKCKEKIVLPIFVTTL 315


>U23514-9|AAC46538.1|  312|Caenorhabditis elegans Long protein 1,
           isoform a protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 169 IPCMTYAGGVCRKVGNCPTGTEVTIKGLC 255
           +P  T+A G   K  NCP       +GLC
Sbjct: 227 MPAFTWASGDNGKCSNCPANAPACYQGLC 255


>Z68316-7|CAM35840.1|  310|Caenorhabditis elegans Hypothetical
           protein K08E4.8 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 408 FFASKNSINKTCLIRHDLLTFVTYYLSI 491
           F+   N    TC +R+DLL    Y+L++
Sbjct: 53  FYLETNDCTNTCSVRYDLLPGYVYWLNL 80


>Z71185-6|CAI46563.1|  286|Caenorhabditis elegans Hypothetical
           protein C35A5.10 protein.
          Length = 286

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 187 AGGVCRKVGNCPTGTEVTIKGLC 255
           +GGVCR  G CP+G       +C
Sbjct: 195 SGGVCRNNGVCPSGHSCVAGNVC 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,953,875
Number of Sequences: 27780
Number of extensions: 268732
Number of successful extensions: 679
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)