Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30j02
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...   105   4e-24
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    29   0.63 
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   1.9  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   5.8  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score =  105 bits (253), Expect = 4e-24
 Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 2/209 (0%)
 Frame = +3

Query: 60  MASIPLMYAQEDCELGGKESVEDDFAYRNNVMNAEREIRLAFIRKVYGLLTVQLLATVSI 239
           +A  P  Y++ + E   +    D F     V    + IR+AF+RKVY +LT QL  T   
Sbjct: 18  LAQAPPAYSEYN-ESATENPAVDQFKNTTPVAECAKSIRMAFLRKVYAILTAQLFVTSLF 76

Query: 240 AAVFMFVEPVQTF-IHTNNWMMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYT 416
             +F ++ P  +F +  + W +I+ F +S+  L  LI+K    P N   L  FT ++  T
Sbjct: 77  GGIF-YLHPAFSFWVQMHPWFLILNFFISLVVLFGLIMKPYSYPRNYIFLFLFTALEGLT 135

Query: 417 IGVVVSYYNTMVVLQALALTFAVVFSLTLYTLNSKRDFSFIGYMXXXXXXXXXXXXXXXX 596
           +G  +++++  ++L+A+ +T  V  +LT +T  SK DFS +G                  
Sbjct: 136 LGTAITFFSARIILEAVFITLGVFVALTAFTFQSKWDFSRLGGFLYVSLWSLILTPLIFF 195

Query: 597 XXQSAAF-EMALSIVGAIFFSMFLVYDTH 680
              S  F +MA +  G + F  ++++DT+
Sbjct: 196 FVPSTPFIDMAFAGFGTLVFCGYILFDTY 224


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 158  IHYIVAVCKVILNRFLPS*FTVFLGVH*RYRSHFHKFRWVF 36
            + Y+V +   +LN+F    FT  +GV   YRS  H+ R  F
Sbjct: 1510 VEYLVNMVDELLNKFPDVNFTGRIGVITPYRSQLHELRRAF 1550


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/31 (29%), Positives = 22/31 (70%)
 Frame = +3

Query: 354 RRDSPANLYLLAAFTVIQAYTIGVVVSYYNT 446
           ++D   +L++LAA+  ++ + + +V+ Y+NT
Sbjct: 208 QKDFHFDLHILAAYLGVEGHPLDLVIDYHNT 238


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -1

Query: 626  SHFEGGALHHQLKKTPQNENCQTSYEHVSNE*EVPFGVKRVQCERKYDGE 477
            S+F    L    KK P+N         VSNE  V  G K +Q  +K+  E
Sbjct: 1142 SYFTDSVLLSMAKKLPRNVKELKEIHGVSNEKAVNLGPKFLQVIQKFIDE 1191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,127
Number of Sequences: 5004
Number of extensions: 60068
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)