Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30j02
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0292 - 32886148-32886354,32886997-32887154,32887265-328873... 95 6e-20
07_01_0554 - 4121692-4121895,4121991-4122148,4123241-4123354,412... 89 3e-18
03_05_1105 + 30438140-30438350,30438448-30438926 87 9e-18
05_04_0254 - 19444409-19444621,19444724-19444887,19444974-194450... 82 5e-16
03_06_0293 - 32889813-32890019,32890144-32890301,32891310-328914... 80 1e-15
07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155 46 3e-05
11_06_0192 + 21128298-21128829,21129341-21129407,21131169-211312... 44 1e-04
11_08_0094 - 28314681-28314747,28315264-28315353,28315589-283157... 29 3.4
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 29 3.4
11_04_0293 + 15926561-15928834 29 4.5
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 28 6.0
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 28 7.9
>03_06_0292 -
32886148-32886354,32886997-32887154,32887265-32887378,
32887660-32887924
Length = 247
Score = 94.7 bits (225), Expect = 6e-20
Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 8/178 (4%)
Frame = +3
Query: 168 EIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTFIHTNNWMMIIAFIL----SMGTL 335
++R AFIRKVY +++VQLL TV++A VEP++TF +++A+++ + +
Sbjct: 31 QLRWAFIRKVYVIVSVQLLVTVAVAGAVNLVEPIKTFFQARTPEVLVAYVIIIISPLIMM 90
Query: 336 IALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTLYTL- 512
+ +I R P NL+ L FTV ++++G+ N V+ QA +T A+V LT YT
Sbjct: 91 LPMIYFRNKHPINLFFLLLFTVCISFSVGLGCLSKNGTVIFQAAGMTAAIVIGLTCYTFW 150
Query: 513 NSKR--DFSFIG-YMXXXXXXXXXXXXXXXXXXQSAAFEMALSIVGAIFFSMFLVYDT 677
+KR DF F+G ++ ++ V A+ FS F++YDT
Sbjct: 151 AAKRGYDFEFLGPFLFAATLVLFLYAIITIFLPMGRTGKLVYGCVAALIFSGFIIYDT 208
>07_01_0554 -
4121692-4121895,4121991-4122148,4123241-4123354,
4123824-4124082
Length = 244
Score = 89.0 bits (211), Expect = 3e-18
Identities = 58/182 (31%), Positives = 88/182 (48%), Gaps = 7/182 (3%)
Frame = +3
Query: 153 MNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTFI---HTNNWMMIIAFILS 323
M E+R A IRK+Y +L++QLL T ++AAV + V + F H + I IL
Sbjct: 25 MTEPPEMRWALIRKIYVILSMQLLLTAAVAAVVVKVRAISHFFVSSHAGLGLYIFLIILP 84
Query: 324 MGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTL 503
L L + P NL LL FTV ++ +G+ ++ + V+L++ LT VVFSLT
Sbjct: 85 FIVLCPLYYYHQKHPVNLILLGLFTVAISFAVGMTCAFTSGKVILESAILTTVVVFSLTA 144
Query: 504 YTL---NSKRDFSFIG-YMXXXXXXXXXXXXXXXXXXQSAAFEMALSIVGAIFFSMFLVY 671
YT RDFSF+G ++ +M + ++ FS ++VY
Sbjct: 145 YTFWAAKRGRDFSFLGPFLFASLIVLLVFAFIQILFPLGRISQMIYGGIASLIFSGYIVY 204
Query: 672 DT 677
DT
Sbjct: 205 DT 206
>03_05_1105 + 30438140-30438350,30438448-30438926
Length = 229
Score = 87.4 bits (207), Expect = 9e-18
Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 7/177 (3%)
Frame = +3
Query: 168 EIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTFIHTNN---WMMIIAFILSMGTLI 338
++R AF+RKVY +L++Q+L T+++A+V +FV PV F + + I IL L
Sbjct: 14 QLRWAFVRKVYAILSIQMLLTIAVASVVVFVRPVALFFVSTPAGFALYIFLIILPFIVLC 73
Query: 339 ALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTLYTLNS 518
L + P NL LLA FT ++ +G+ ++ V+L++ LT AVV SLT YT +
Sbjct: 74 PLYYYYQRHPVNLLLLALFTAAISFAVGLTCAFTKGEVILESAILTAAVVVSLTAYTFWA 133
Query: 519 KR---DFSFIG-YMXXXXXXXXXXXXXXXXXXQSAAFEMALSIVGAIFFSMFLVYDT 677
R DFSF+G ++ M + A+ F ++VYDT
Sbjct: 134 ARRGHDFSFLGPFLFAAVMILMVFALIQVFFPLGRVSLMIYGGLAALVFCGYIVYDT 190
>05_04_0254 -
19444409-19444621,19444724-19444887,19444974-19445087,
19446086-19446395
Length = 266
Score = 81.8 bits (193), Expect = 5e-16
Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 6/182 (3%)
Frame = +3
Query: 150 VMNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTFIHTNNWMMIIAFILSMG 329
+ E +R F+RKVYG+L QLL T +++A+ + + + ++ + ++ +L
Sbjct: 44 ISRGESALRWGFVRKVYGILAAQLLLTTAVSALTVLHPTLNATLSSSPTLALVLAVLPFV 103
Query: 330 TLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTLYT 509
++ L + P N L FT+ +++IGV + +VL+AL LT AVV SLT YT
Sbjct: 104 LMVPLYHYQHKHPHNFVYLGLFTLCLSFSIGVACANTQGKIVLEALILTSAVVASLTAYT 163
Query: 510 LNSKRDFSFIGYMXXXXXXXXXXXXXXXXXXQSAAFEMALSIV------GAIFFSMFLVY 671
+ + GY+ S F + V GA+ FS F++Y
Sbjct: 164 FWASKKGKEFGYLGPILFSALVLLVVISFIQASVFFPLGSGPVALFGGLGALVFSGFIIY 223
Query: 672 DT 677
DT
Sbjct: 224 DT 225
>03_06_0293 -
32889813-32890019,32890144-32890301,32891310-32891423,
32891531-32891777
Length = 241
Score = 80.2 bits (189), Expect = 1e-15
Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 7/177 (3%)
Frame = +3
Query: 168 EIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPV-QTFIHTNNWMMIIAFILSMGTLIAL 344
++R A I K+Y +L+VQL T ++AA + V V + F+ +N + F+L + ++
Sbjct: 26 DLRWALIHKIYVILSVQLAMTAAVAAFVVKVRGVSEFFVSSNAGFALYIFLLFLPLIVLC 85
Query: 345 IVK--RRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTLYTL-N 515
++ + P NL LL FTV ++ +G+ +Y + V+ +A ALT VV SLT YT
Sbjct: 86 PLRYYHQKHPVNLLLLGLFTVAISFAVGMTCAYTSGKVIFEAAALTAVVVISLTAYTFWA 145
Query: 516 SKR--DFSFIG-YMXXXXXXXXXXXXXXXXXXQSAAFEMALSIVGAIFFSMFLVYDT 677
+KR DF+F+G ++ EM + ++ FS +++YDT
Sbjct: 146 AKRGHDFNFLGPFLFSAVMVLILFSLIQIFFPLGKISEMIYGGLASLVFSGYIIYDT 202
>07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155
Length = 220
Score = 46.0 bits (104), Expect = 3e-05
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 4/156 (2%)
Frame = +3
Query: 222 LATVSIAAVFMFVEPVQTFIHTNNWMMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTV 401
+ +A +M P + I+A L + IA V + +L
Sbjct: 26 VGVAGVACTYMIERPELRWAFIRKVYAIVATQLVVTVAIAAAVYSVPAIRRFFLARTPAS 85
Query: 402 IQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTLYTL-NSKR--DFSFI-GYMXXXXXXX 569
+ A+ + +V + +++A +LTF +VF LTLYT +KR DFSF+ ++
Sbjct: 86 LAAFVLVIVAPLIAGIAIIEAASLTFGLVFGLTLYTFWAAKRGHDFSFLRPFLVAAFLVL 145
Query: 570 XXXXXXXXXXXQSAAFEMALSIVGAIFFSMFLVYDT 677
V A+ FS F++YDT
Sbjct: 146 VLYGLIQMLVPTGKVATTVYGCVAALVFSGFIIYDT 181
>11_06_0192 +
21128298-21128829,21129341-21129407,21131169-21131211,
21131301-21131367,21131613-21131770,21131863-21132057
Length = 353
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +3
Query: 105 GGKESVEDDFAYRNNVMNAEREIRL--AFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTF 278
G KE V + R V E + RL AF+RKVY +L +Q T +IA V V P+ F
Sbjct: 55 GEKEVVAEKAPARRKVAAEEEDPRLRWAFVRKVYCILALQFAVTAAIAVVAWAVRPIPRF 114
Query: 279 IHTN---NWMMIIAFIL 320
+W++ +A +L
Sbjct: 115 FAAGSLASWLVYLAILL 131
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = +3
Query: 450 VVLQALALTFAVVFSLTLYTL---NSKRDFSFI-GYMXXXXXXXXXXXXXXXXXXQSAAF 617
VVLQA LT V LT++T + DF+F+ ++ A
Sbjct: 239 VVLQAAILTAVAVIGLTIFTFWAAHRGHDFTFMYPFLAASLLVLLAYLIIQICFPLGRAG 298
Query: 618 EMALSIVGAIFFSMFLVYDTHQ 683
+ + FS F+V+DT+Q
Sbjct: 299 MTIYGCLATVLFSAFIVFDTNQ 320
>11_08_0094 -
28314681-28314747,28315264-28315353,28315589-28315725,
28317020-28317589
Length = 287
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 69 IPLMYAQEDCELGGKESVED-DFAYRNNVMNAEREIRLAFIRKV 197
+PL Y +DC++ G + ++D D A N + E + RL + +V
Sbjct: 191 LPLFYFGDDCDMWGGDMLKDTDIALAPNFPSDEGQKRLEHLHRV 234
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 332 SDCIDRETTRFTRQSVSPGCIYCYPSVHHRRCRVILQ 442
SD + ++FT P CY +HH +C V LQ
Sbjct: 169 SDSLLYSVSQFTLLGTDPYHKLCYKELHHPKCDVCLQ 205
>11_04_0293 + 15926561-15928834
Length = 757
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 665 EEHAEEYRADDGQSHFEGGALHHQLKKTPQNENCQTSYEHVSNE 534
+E EEY +DDG+ +GG L L + Q+ + +T E S +
Sbjct: 360 DEEEEEYLSDDGKDDDDGGGLQAPL-LSRQSTDVETKNEPASGQ 402
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/109 (21%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Frame = -1
Query: 680 VRVVNEEHAEEYRADDGQSHFEGGALHHQLKKTPQNEN-CQTSY-----EHVSNE*EVPF 519
+ V +EEH + G+ GG+ +L+ Q+E+ CQ+ H + + ++P
Sbjct: 2448 ITVASEEHRDPESHLSGEVSMSGGSSELKLESLNQSESACQSGEVTLEDTHATLDIQIPA 2507
Query: 518 GVKRVQCERKYDGEC*SQSLQHHHGVVV*HDNADGVRLDNSKCSQEIQI 372
++ + ++ G+ QH H V+ H+ DG +++ ++Q+
Sbjct: 2508 LIESEE-KKSPGGDVHGSEEQHMHEVL--HNTVDGSISPSNREQDKLQV 2553
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -1
Query: 311 SNDHHPIIGVYKC--LYGLNKHKYSRNGDRSQELHCQETVD 195
S+ +HP++ + +Y +NK K +R+ L CQE+ D
Sbjct: 686 SSQNHPMLSYVELRNVYRINKGKLTRDNSGPGNLTCQESFD 726
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,808,117
Number of Sequences: 37544
Number of extensions: 403611
Number of successful extensions: 1040
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -