Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30i19
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    27   1.1  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    24   6.1  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    24   6.1  

>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 178 LSCNCLSMSEYSLIVSVR-FEFSPTYIVATE 89
           ++C CL++  Y+L VS+R + FS   + + E
Sbjct: 343 INCECLNIKAYTLFVSLRKYSFSSKNVQSKE 373


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 6/15 (40%), Positives = 14/15 (93%)
 Frame = -3

Query: 178 LSCNCLSMSEYSLIV 134
           +SCNCL+++ ++++V
Sbjct: 202 MSCNCLALATFAMVV 216


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 84  IYSVATIYVGLNSNRTETIRLYSL 155
           +Y+ A +++GL  N + T+ LYSL
Sbjct: 164 VYASADLWIGLVYNISITLSLYSL 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 966,020
Number of Sequences: 5004
Number of extensions: 13935
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)