Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30i16
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    27   3.8  
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa...    27   3.8  
SPAC1610.02c |||mitochondrial ribosomal protein subunit L1|Schiz...    25   8.8  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   8.8  

>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 414 LKDLCQIYGHLHGGYPFTDTD 476
           L+ +C+I+ HL GG+ F++ D
Sbjct: 587 LQYICRIFEHLKGGFMFSNKD 607


>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 264 FYLFNDSPRDIRKSELDPSKDTSV*DMNE--NS*KPVFYTFKTSLLKISACVKKF 106
           FYL  D  + +  +  D  +DT V D+ +   + K   ++ K  LLK    +K +
Sbjct: 73  FYLLEDLAKPVTNAGADADEDTIVKDLKKELENEKKANHSLKNELLKTREQIKNY 127


>SPAC1610.02c |||mitochondrial ribosomal protein subunit
           L1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 253

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 347 AHPDRFFK*SVQILPQNAKNTNSQGLMPDIRTFT 448
           AHP+     S ++LPQ AK   S+ LMP I+  T
Sbjct: 141 AHPN-----SAELLPQVAKLLGSKRLMPSIKRGT 169


>SPCC663.03 |pmd1||leptomycin efflux transporter
            Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -1

Query: 439  PYIWHKSLRISVLSILGQNLDASLKEAVRMCGYTIFRPHIISTPNNQHVAC 287
            P ++  ++R ++  +LG + D S +E +  C        I+  PN  +  C
Sbjct: 1204 PTLYQGTVRENI--VLGASKDVSEEEMIEACKKANIHEFILGLPNGYNTLC 1252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,390
Number of Sequences: 5004
Number of extensions: 59583
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)