Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30i16
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0109 + 8375699-8375776,8376461-8376877,8376980-8377243,837...    30   1.7  
09_03_0179 - 13131404-13131514,13131834-13131920,13132316-131324...    28   7.0  
01_07_0324 - 42731581-42731696,42731791-42731926,42732006-427320...    28   7.0  
01_03_0151 - 13229861-13230347,13230442-13230540,13230701-132309...    28   9.2  

>11_02_0109 +
           8375699-8375776,8376461-8376877,8376980-8377243,
           8378402-8378806
          Length = 387

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -1

Query: 451 PCKCPYIWHKSLRISVLSILGQNLDASLKEAVRMCGYTIFRPHIISTPNNQ 299
           PC   +++H S+ +  LS + +NLD  + EA    G T   P +I    NQ
Sbjct: 147 PCNSVHLFHSSMSLMWLSQVPENLDGIMNEANIHIGLTT-PPLVIKLYQNQ 196


>09_03_0179 -
           13131404-13131514,13131834-13131920,13132316-13132448,
           13133079-13133319,13133423-13133540,13133546-13133731,
           13133864-13134049,13134443-13134652,13135171-13135347,
           13135823-13135964,13136385-13136927,13137565-13138022
          Length = 863

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 14  ADVVTESELRAEFDELYLIDKNNKKSQDI 100
           AD V + +L++E +ELY   K+N+ S D+
Sbjct: 201 ADAVEDMQLQSEREELYSTVKSNRLSDDL 229


>01_07_0324 -
           42731581-42731696,42731791-42731926,42732006-42732098,
           42732189-42732290,42732383-42732516,42732593-42732707,
           42733534-42733560,42733692-42733799,42733890-42733982,
           42734066-42734365
          Length = 407

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 330 LNIVYPHILTASLSEASKFCPRMLRTLILKDLCQIYGHLHGGYPFTDTDIRKL 488
           L+ +Y + + A      K+C    + LI    C++YG   G +  TD  +RK+
Sbjct: 118 LDTIYSNFIDAL--PVVKYCSENNKRLIHFSTCEVYGKTIGSFLPTDHPLRKI 168


>01_03_0151 -
           13229861-13230347,13230442-13230540,13230701-13230918,
           13231210-13231317,13231366-13231518,13232962-13233015,
           13233276-13233374,13234458-13234551,13234638-13234715,
           13237696-13237766,13238321-13238416,13238505-13238582,
           13238683-13238751,13238830-13238897,13239038-13239115,
           13239190-13239289,13240002-13240061,13240488-13240579,
           13241730-13241779,13241870-13241954,13242035-13242134,
           13242933-13243013,13244827-13244907
          Length = 832

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 181 RKFLKASLLYFQNIPLKNISVRKKI 107
           R FLK  +++ + IP+KN+SV  KI
Sbjct: 254 RAFLKDHVVFKEAIPIKNVSVVSKI 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,475,361
Number of Sequences: 37544
Number of extensions: 312676
Number of successful extensions: 656
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)