Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30i12
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    27   2.9  
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.9  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    26   5.1  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   5.1  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    26   5.1  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    26   6.7  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    26   6.7  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   8.9  

>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 574 VKARGVNREQAEIILSRNLIEIGDD 648
           +KARG  REQ   IL+R  I  G D
Sbjct: 418 LKARGATREQITEILNRQAIAAGTD 442


>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = +1

Query: 547 SKEEALKAVVKARGVNREQAEIILSRNLI 633
           SK  ++K + +ARG++ +QAE  LS+N++
Sbjct: 3   SKLLSMKFMQRARGIDPKQAEEELSKNIV 31


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = +1

Query: 196 LLPDKYYYVGYDMPGHGKSDAFPIGVKLS-RLHFTPVIEYVAKHLGWTTFTCMAHSMGGE 372
           L PD    V +D PG G SD   IG   S  +    + E +A+      +  +AH +GG 
Sbjct: 304 LSPDTRVCV-WDRPGMGWSDN--IGSPSSVGIVMDLLTEALAQADVSGPYVLVAHGIGGV 360

Query: 373 QAMFYNAINPGQIKKLILLDVGLSLQRLQ 459
            +  + A +  ++K ++ +D G S+Q L+
Sbjct: 361 YSNVFAARHLSEVKGIVFVDAG-SVQTLK 388


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +1

Query: 520  KQISERKAYSKEEALKAVVKARGVNREQAEIILSRNLIEIGDDRFVLSWDNRLKLLAP 693
            + +SE    + E     + K    + E+  I+L+ NLI    +  V S +NRL  L P
Sbjct: 1306 ESLSEWITKTLEHETTTLAKEAETSEERIYILLTGNLIGQACEEAVQSQNNRLSTLIP 1363


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 229 HIQHNNIYPGAVPVMECRWPHC 164
           H+Q  +I+P  +   +CRW  C
Sbjct: 645 HLQEMHIFPQILETGKCRWSDC 666


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
 Frame = +1

Query: 370 EQAMFYNAINPGQIKKLIL--------LDVGLSLQRLQ-MVPMNEYYKSFYDAHY 507
           E+  FYN +N  QIKKL L        L+   + ++L+ +  MN +   FY +HY
Sbjct: 233 EEQEFYNNLNQFQIKKLSLERQYDCANLEFEHNSRKLEKLQKMNVFSDIFYISHY 287


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +1

Query: 490 FYDAHYVDYHKQISERKAYSKEEALKAVVKARGVNREQAEIILSRNLIEIG 642
           FY+   +DY  +  E+K+YS + + +      G ++++A  IL   L++ G
Sbjct: 102 FYENDIIDYDIEYIEQKSYSSKPSARVQKDDGGESKDEA--ILDFLLVQRG 150


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +1

Query: 304 IEYVAKHLGWTTFTCMAHSMGGEQAMFYNAINP---GQIKKLILLDVGLSLQRLQMVPMN 474
           I+Y+ K  G T  T +  S G  QA    +I+P    +I  LI L   +S + L    ++
Sbjct: 204 IDYILKTSGQTKLTYIGFSQGTAQAFASLSIHPLLNDKINSLIALAPAISPKGLHNRVVD 263

Query: 475 EYYKS 489
            + K+
Sbjct: 264 AFVKA 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,193,403
Number of Sequences: 5004
Number of extensions: 67883
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)