Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30i12
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1821 + 40126389-40126508,40126589-40126646,40126782-401268... 36 0.047
05_03_0253 - 11014334-11014592,11015061-11015296,11015370-11015870 35 0.081
01_01_1077 + 8485655-8486134,8486423-8486554,8487725-8487966,848... 34 0.11
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 33 0.25
12_02_1247 - 27322920-27323175,27323252-27323490,27324309-27324776 32 0.43
05_04_0338 - 20392482-20392832,20393236-20393305,20393571-203937... 31 1.0
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074... 31 1.3
02_04_0086 + 19610899-19610992,19613399-19613652,19613744-196139... 30 1.7
09_05_0003 + 20016534-20016703,20017679-20017915,20018585-200186... 30 2.3
05_06_0206 + 26369089-26369143,26369627-26369733,26369814-263706... 29 5.3
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 28 7.1
06_01_0505 + 3639867-3640301,3640386-3640792,3641024-3641609,364... 28 7.1
02_02_0628 + 12365109-12365150,12366315-12366411,12366489-123665... 28 7.1
>01_06_1821 +
40126389-40126508,40126589-40126646,40126782-40126837,
40127076-40127176,40127336-40127405,40127501-40127570,
40127970-40128026,40128110-40128177,40128258-40128338,
40128474-40128551,40128644-40128799,40128874-40128933,
40129253-40129317,40130002-40130059
Length = 365
Score = 35.5 bits (78), Expect = 0.047
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 109 VSWGNPRGDPILLIHGRQDSVATYIPLLELLPDKYYYVGYDMPGHGKSD 255
V G+ P+L IHG +Y +L ++ D Y+ + +D G G SD
Sbjct: 116 VEAGSSSNPPVLFIHGFPSQAYSYRNVLPVVSDNYHAIAFDWLGFGFSD 164
>05_03_0253 - 11014334-11014592,11015061-11015296,11015370-11015870
Length = 331
Score = 34.7 bits (76), Expect = 0.081
Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 3/134 (2%)
Frame = +1
Query: 118 GNPRGDPILLIHGRQDSVATYIPLLELLPDK-YYYVGYDMPGHGKSDAFPIGVKLSRLHF 294
G P P+LL+HG + + L D Y V D+ G+G SDA ++ + +H
Sbjct: 30 GPPGAPPVLLLHGFPQVWYAWRHQMRALADAGYRAVAPDLRGYGDSDAPAAELQYTAMHV 89
Query: 295 T-PVIEYVAKHLG-WTTFTCMAHSMGGEQAMFYNAINPGQIKKLILLDVGLSLQRLQMVP 468
++ + +G +AH G A P +++ L+ L V + + P
Sbjct: 90 VGDLVALLDAVVGAGKPVFVVAHDWGALTAWNLCLFRPDRVRALVSLSVAFTPRSPARRP 149
Query: 469 MNEYYKSFYDAHYV 510
++ + D +Y+
Sbjct: 150 VDGLRALYGDDYYI 163
>01_01_1077 +
8485655-8486134,8486423-8486554,8487725-8487966,
8488254-8488500
Length = 366
Score = 34.3 bits (75), Expect = 0.11
Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 1/146 (0%)
Frame = +1
Query: 97 KLTLVSWGNPRGDPILLIHGRQDSVATYIPLLELLPDK-YYYVGYDMPGHGKSDAFPIGV 273
+L + G G +LL+HG + ++ + L + + V D+ G+G SDA P
Sbjct: 18 RLHVAEAGPEDGPAVLLVHGFPELWYSWRHQMRALAARGFRAVAPDLRGYGDSDAPPGRD 77
Query: 274 KLSRLHFTPVIEYVAKHLGWTTFTCMAHSMGGEQAMFYNAINPGQIKKLILLDVGLSLQR 453
+ LH + + +G AH G A + P + + L V +
Sbjct: 78 SYTVLHLVGDLVALIADVGQPRVFVAAHDWGAAVAWQLCLLRPDLVTAFVALSVEYHPRN 137
Query: 454 LQMVPMNEYYKSFYDAHYVDYHKQIS 531
P+ D HY+ + ++ S
Sbjct: 138 PTRSPVQTLRAVCGDGHYICFFQRPS 163
>02_04_0371 + 22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 33.1 bits (72), Expect = 0.25
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 139 ILLIHGRQDSVATYIPLLELLPDKYYYVGYDMPGHGKSD 255
IL +HG + ++P+++ L + D+PGHG+S+
Sbjct: 1483 ILFLHGFLGTSEDWVPMMKALSPSARVIAVDLPGHGESE 1521
>12_02_1247 - 27322920-27323175,27323252-27323490,27324309-27324776
Length = 320
Score = 32.3 bits (70), Expect = 0.43
Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 1/127 (0%)
Frame = +1
Query: 58 KVLKEWTIPLPWGKLTLVSWGNPRGDPILLIHGRQDSVATYIPLLELLPDK-YYYVGYDM 234
+V++ W + L + G G P+LLIHG + ++ + L + + + D+
Sbjct: 4 EVVRHWNADVNGISLHVAEQGPADGPPVLLIHGFPELWLSWRHQMAALAARGFRALAPDL 63
Query: 235 PGHGKSDAFPIGVKLSRLHFTPVIEYVAKHLGWTTFTCMAHSMGGEQAMFYNAINPGQIK 414
G+G S + H + + HL + H +G + A P +
Sbjct: 64 RGYGDSTVPDDPAAYTVFHIVGDLVALLDHLALPKVMVVGHDLGAQVAWHLCLFRPDMLL 123
Query: 415 KLILLDV 435
++ L V
Sbjct: 124 AVVNLGV 130
>05_04_0338 -
20392482-20392832,20393236-20393305,20393571-20393790,
20394249-20394342,20394754-20394865,20395081-20395487
Length = 417
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 130 GDPILLIHGRQDSVATYIPLLELLPDKYYYVGYDMPGHGKSDAFP 264
G P+LL+HG SV + + +L + Y D+ G G SD P
Sbjct: 118 GPPLLLVHGFGASVGHWRRNIGVLSESYTVYAIDLLGFGASDKPP 162
>05_06_0254 -
26706830-26706943,26707063-26707193,26707330-26707417,
26707970-26708087,26708184-26708332,26708787-26708840,
26708963-26709031,26709146-26709246,26709391-26709473,
26709846-26710041,26710171-26710279
Length = 403
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = +1
Query: 226 YDMPGHGKSDAFPIGVKLSRLHFTPVIEYVAKHLGWTTFTCMAHSMGGEQAMFYNAINPG 405
+D G G+S P S + + HLGW HSMG + A+ P
Sbjct: 84 FDNRGVGRSSVLPHKSYYSTVIMARDALALMDHLGWKKAHVFGHSMGAMISCKLAAMAPH 143
Query: 406 QIKKLILLDV 435
+I L LL+V
Sbjct: 144 RICSLALLNV 153
>02_04_0086 +
19610899-19610992,19613399-19613652,19613744-19613955,
19614059-19614320,19614432-19614728
Length = 372
Score = 30.3 bits (65), Expect = 1.7
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = +1
Query: 139 ILLIHG----RQDSVATYIPLLELLPDKYYYVGYDMPGHGKSDAFPIGVKLSRLHFTPVI 306
I+ +HG R D++ L E L Y V +D PG+G+SD P G + F I
Sbjct: 98 IIFVHGFDSCRYDALQVSPELAEELG--VYMVSFDRPGYGESDPHP-GRTEDSIAFD--I 152
Query: 307 EYVAKHLG-WTTFTCMAHSMGGE 372
E +A L F + +SMGGE
Sbjct: 153 EGLADGLQLGPKFYLIGYSMGGE 175
>09_05_0003 +
20016534-20016703,20017679-20017915,20018585-20018631,
20018932-20019050,20019128-20019288,20019379-20019488,
20019571-20019670,20019701-20019743,20020375-20020503
Length = 371
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 3/100 (3%)
Frame = +1
Query: 139 ILLIHGRQDSVATYIPLLELLPDKYYYVGYDMPGHGKSDAFPIGVKLSR---LHFTPVIE 309
++++HG S + + L ++ + D G G S K + F E
Sbjct: 103 LVMVHGYGASQGFFFRNFDALASRFRVIAIDQLGWGGSSRPDFTCKSTEETEAWFIDSFE 162
Query: 310 YVAKHLGWTTFTCMAHSMGGEQAMFYNAINPGQIKKLILL 429
K + F + HS GG A Y +P ++ LIL+
Sbjct: 163 EWRKAKNLSNFILLGHSFGGYVAAKYALQHPEHVQHLILV 202
>05_06_0206 +
26369089-26369143,26369627-26369733,26369814-26370647,
26370781-26370939,26371070-26371410,26373894-26373991,
26374244-26374350,26374715-26375266,26375366-26375524,
26375631-26376005
Length = 928
Score = 28.7 bits (61), Expect = 5.3
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 3/110 (2%)
Frame = +1
Query: 175 TYIPLLELLPDKYYYVGYDMPGHGKSDAFPIGVK---LSRLHFTPVIEYVAKHLGWTTFT 345
T + ++E+ YD G SD + VK LS + I+Y L T
Sbjct: 262 TTLQVIEIKAPNLSTFDYDGNLAGLSDGGLLPVKNLHLSSFYQHHTIQYTCAKLPSVAPT 321
Query: 346 CMAHSMGGEQAMFYNAINPGQIKKLILLDVGLSLQRLQMVPMNEYYKSFY 495
++ E F I+P + L L + LS+ R P N+Y Y
Sbjct: 322 IETLTIFSESERFNTQISPFRFLHLKCLTISLSIYRGGFSPSNDYLSLAY 371
>08_01_0353 -
3107628-3107774,3108177-3108213,3108248-3109164,
3109210-3110952
Length = 947
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 127 RGDPILLIHGRQDSVATYIPLLELLPDKYYYVGYDMPGHGKSDAFPIG 270
RG P L +HG +D L + + V YD+P H + +G
Sbjct: 555 RGYPCLSLHGGKDQTDRESTLADFKSNLELVVNYDVPNHYEDYVHRVG 602
>06_01_0505 +
3639867-3640301,3640386-3640792,3641024-3641609,
3642185-3642244
Length = 495
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +1
Query: 511 DYHKQISERKAYS---KEEALKAVVKARGVNREQAEIILSRNLIEIGDDRFV-LSWDNRL 678
+ +++I+ RKA S + EA KAV+ R + + L R ++E +R L WD+ L
Sbjct: 86 EVNRKIASRKALSVILRREATKAVLDKRKPGKGTRRL-LPRTVLEALHERITALRWDSAL 144
Query: 679 KL 684
K+
Sbjct: 145 KV 146
>02_02_0628 +
12365109-12365150,12366315-12366411,12366489-12366554,
12367884-12367963,12368051-12368125,12368232-12368381,
12369816-12369881,12370141-12370206,12370653-12370763,
12370917-12371003,12371087-12371193,12372141-12372255,
12372472-12372537,12373521-12373615,12373700-12373880
Length = 467
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = +1
Query: 511 DYHKQIS-----ERKAYSKEEALKAVVKARGVNR--EQAEIILSRNLIEIGDDRFVLSWD 669
D++K IS E K K + K+ + R N A+ + +++ + IGD + LSW
Sbjct: 337 DFNKAISSAKTEEEKTKIKSDQQKSTMTMRAYNNILAMAQPLRAKSPLFIGDKKITLSWM 396
Query: 670 NRLKLLAPS 696
+ K AP+
Sbjct: 397 EQPKKPAPT 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,404,867
Number of Sequences: 37544
Number of extensions: 437860
Number of successful extensions: 1030
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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