Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30i12
(763 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 23 3.1
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 23 3.1
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 23 3.1
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 23 3.1
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 22 5.4
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 22 5.4
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 22 5.4
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 22 5.4
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 21 9.4
DQ435327-1|ABD92642.1| 145|Apis mellifera OBP10 protein. 21 9.4
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 9.4
AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc fi... 21 9.4
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 23.0 bits (47), Expect = 3.1
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +3
Query: 324 FGLDDVYMYGT 356
FG+DDV +YGT
Sbjct: 11 FGVDDVSLYGT 21
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 23.0 bits (47), Expect = 3.1
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +3
Query: 324 FGLDDVYMYGT 356
FG+DDV +YGT
Sbjct: 11 FGVDDVSLYGT 21
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 23.0 bits (47), Expect = 3.1
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +3
Query: 324 FGLDDVYMYGT 356
FG+DDV +YGT
Sbjct: 11 FGVDDVSLYGT 21
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 23.0 bits (47), Expect = 3.1
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +1
Query: 190 LELLPDKYYYVGYDMPGHGK--SDAFPIG 270
LE P +YY+ +PG+G D PIG
Sbjct: 406 LEGAPQNFYYIEEYLPGNGVIIPDDPPIG 434
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 22.2 bits (45), Expect = 5.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 149 ISSIGSPRGLPQDTSVNFPQGNGIVHSLS 63
I S+ LPQ +N P+GN + +LS
Sbjct: 357 IVSMKIMENLPQSGRINDPEGNEYMLALS 385
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 22.2 bits (45), Expect = 5.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +1
Query: 157 RQDSVATYIPLLELLPDKYYYVGYDMPGH 243
R+ + I L + KYY D PGH
Sbjct: 10 RERGITIDIALWKFETSKYYVTIIDAPGH 38
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 22.2 bits (45), Expect = 5.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 547 SKEEALKAVVKARGVNREQA 606
S+ +AL V+K VN+EQ+
Sbjct: 763 SRNKALLPVIKPANVNKEQS 782
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +1
Query: 157 RQDSVATYIPLLELLPDKYYYVGYDMPGH 243
R+ + I L + KYY D PGH
Sbjct: 67 RERGITIDIALWKFETSKYYVTIIDAPGH 95
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +1
Query: 157 RQDSVATYIPLLELLPDKYYYVGYDMPGH 243
R+ + I L + KYY D PGH
Sbjct: 67 RERGITIDIALWKFETAKYYVTIIDAPGH 95
>DQ435327-1|ABD92642.1| 145|Apis mellifera OBP10 protein.
Length = 145
Score = 21.4 bits (43), Expect = 9.4
Identities = 7/23 (30%), Positives = 12/23 (52%)
Frame = -3
Query: 380 MACSPPIECAIHVNVVQPKCLAT 312
+ CSP + C + V + +AT
Sbjct: 14 LICSPSVHCGTRPSFVSDEMIAT 36
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.4 bits (43), Expect = 9.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 295 TPVIEYVAKHLGWTTFTCMAHSMGGEQA 378
T +IE V + T+TC+A + G A
Sbjct: 544 TLIIENVERMSDQATYTCVARNAQGYSA 571
>AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc
finger domain-Z1 isoform protein.
Length = 111
Score = 21.4 bits (43), Expect = 9.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 517 HKQISERKAYSKEEALKAVVKARGVNREQAE 609
HK I R+ E+ K + + R REQ E
Sbjct: 51 HKSIYHRQHSKNEQQRKEMEQMREREREQRE 81
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,889
Number of Sequences: 438
Number of extensions: 4912
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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