Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30h21
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    50   3e-08
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   7.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 49.6 bits (113), Expect = 3e-08
 Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
 Frame = +1

Query: 310 IVDLSENSFTNVT--LMADLS-IEILNLSRCKIDVIENASFKELQEMRVLDLSYNKLTAA 480
           +++LS N  T++   +  DL  ++IL+L    ID IE+ +F  L  +  L+LS NKL   
Sbjct: 339 VLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRT- 397

Query: 481 KLSPHAFEGKYTPEQYEPLAAMRVLNLAYNDLHSLNQDLFEHLPQLEELDISGNPLTTID 660
            +    F G         L  +  L L+ N + S++   F +   L+ELD+SGN LT++ 
Sbjct: 398 -VGAQLFNG---------LFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVP 447

Query: 661 HVTLIAISSLPMLKVL 708
                A+  L +LK L
Sbjct: 448 D----ALRDLALLKTL 459



 Score = 47.6 bits (108), Expect = 1e-07
 Identities = 39/142 (27%), Positives = 67/142 (47%)
 Frame = +1

Query: 319 LSENSFTNVTLMADLSIEILNLSRCKIDVIENASFKELQEMRVLDLSYNKLTAAKLSPHA 498
           L  +     T +  + + +LNLS   +  I+   FK+L  +++LDL  N +   ++  +A
Sbjct: 321 LGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSID--RIESNA 378

Query: 499 FEGKYTPEQYEPLAAMRVLNLAYNDLHSLNQDLFEHLPQLEELDISGNPLTTIDHVTLIA 678
           F          PL  +  L L+ N L ++   LF  L  L  L +SGN + +ID    +A
Sbjct: 379 F---------LPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDP---LA 426

Query: 679 ISSLPMLKVLRMRSCQLTEIPE 744
             +   LK L +   +LT +P+
Sbjct: 427 FRNCSDLKELDLSGNELTSVPD 448



 Score = 44.4 bits (100), Expect = 1e-06
 Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 4/148 (2%)
 Frame = +1

Query: 307 KIVDLSENSFTNV---TLMADL-SIEILNLSRCKIDVIENASFKELQEMRVLDLSYNKLT 474
           +I+DLS N  T +   + + DL  ++ L+L R  I  I   +   L  +R  + SYN L 
Sbjct: 215 RILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLD 274

Query: 475 AAKLSPHAFEGKYTPEQYEPLAAMRVLNLAYNDLHSLNQDLFEHLPQLEELDISGNPLTT 654
           +        EG +   +      +R ++LAYN L  L + +F  L QL  L+++GN L +
Sbjct: 275 SLP------EGLFASTR-----DLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGS 323

Query: 655 IDHVTLIAISSLPMLKVLRMRSCQLTEI 738
            D V       L  L VL +    LT I
Sbjct: 324 -DRVDETTFLGLIRLIVLNLSYNMLTHI 350



 Score = 41.1 bits (92), Expect = 1e-05
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 2/135 (1%)
 Frame = +1

Query: 307 KIVDLSENSFTNVT-LMADLSI-EILNLSRCKIDVIENASFKELQEMRVLDLSYNKLTAA 480
           K +DLS N  T+V   + DL++ + L+L   +I    N SF+ L ++  L L  N +   
Sbjct: 434 KELDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDI--- 490

Query: 481 KLSPHAFEGKYTPEQYEPLAAMRVLNLAYNDLHSLNQDLFEHLPQLEELDISGNPLTTID 660
                   G  +      L  +++LNLA N +  + +  FE   +LE + + GN L+ I+
Sbjct: 491 --------GNLSRGMLWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDIN 542

Query: 661 HVTLIAISSLPMLKV 705
            V   +I+SL +L +
Sbjct: 543 GV-FTSIASLLLLNL 556



 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 26/95 (27%), Positives = 50/95 (52%)
 Frame = +1

Query: 421 FKELQEMRVLDLSYNKLTAAKLSPHAFEGKYTPEQYEPLAAMRVLNLAYNDLHSLNQDLF 600
           F  L+++ VL+L+ N+L + ++    F G         L  + VLNL+YN L  ++  +F
Sbjct: 305 FTRLEQLLVLNLAGNRLGSDRVDETTFLG---------LIRLIVLNLSYNMLTHIDARMF 355

Query: 601 EHLPQLEELDISGNPLTTIDHVTLIAISSLPMLKV 705
           + L  L+ LD+  N +  I+    + + +L  L++
Sbjct: 356 KDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLEL 390



 Score = 28.3 bits (60), Expect = 0.082
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
 Frame = +1

Query: 436 EMRVLDLSYNKLTAAKLSPHAFEGKYTPEQY--------------EPLAAMRVLNLAYND 573
           ++R+LDLS N++T  + +    + +   E +                L  +R  N +YN 
Sbjct: 213 DIRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNS 272

Query: 574 LHSLNQDLFEHLPQLEELDISGNPLTTIDHVTLIAISSLPMLKV 705
           L SL + LF     L E+ ++ N L  +       +  L +L +
Sbjct: 273 LDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNL 316



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 585  EPGSVRTLTAVGGAGYQWESPDHDRSRYFDCH 680
            +PG      A+  A       D DR R +DC+
Sbjct: 1038 KPGKSSGAAAMASAAPMPACFDSDRERLYDCY 1069


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 107 SSSLELIVKTLKHLEPAPTLLQDHL 181
           S+ + LIV    H+E  P LL  HL
Sbjct: 320 SAEIRLIVTAPLHVEVTPPLLSVHL 344


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 107 SSSLELIVKTLKHLEPAPTLLQDHL 181
           S+ + LIV    H+E  P LL  HL
Sbjct: 320 SAEIRLIVTAPLHVEVTPPLLSVHL 344


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 631 ISGNPLTTIDHVTLIAISSLPMLKVLR 711
           ISG P+   DH  L     L M++ ++
Sbjct: 327 ISGAPIERPDHAVLCVYMGLSMVEAIK 353


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 282 PFFFTEERVQILIVTINF 229
           PFF+ +E   + +V +NF
Sbjct: 380 PFFYVQEDDDVKLVLLNF 397


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/55 (21%), Positives = 21/55 (38%)
 Frame = +3

Query: 597 VRTLTAVGGAGYQWESPDHDRSRYFDCHFEFADAQGVENAFLPTDRDP*KVPPHS 761
           +++   VG        P +D  R  +   E  + +      +  +RDP   PP S
Sbjct: 386 IQSTDFVGDCSSLLNLPGNDARRRVEAALEAVEEERQREYGIRVERDPILTPPSS 440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,186
Number of Sequences: 438
Number of extensions: 4148
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)