Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30h19
(210 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 50 3e-08
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 27 0.34
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 25 1.4
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|... 23 4.2
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 23 4.2
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 23 4.2
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 23 5.5
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 23 5.5
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 23 7.3
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 23 7.3
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 23 7.3
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb... 23 7.3
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 22 9.6
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 22 9.6
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 22 9.6
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 22 9.6
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 50.4 bits (115), Expect = 3e-08
Identities = 24/45 (53%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Frame = +3
Query: 78 SKGGLRTIANX-ENEERFGYVFAVSGPVVTAEKMSGSAMYELVRV 209
+K +R++ N E+E R+G +F+VSGPVV A M G +MYELVRV
Sbjct: 8 AKKAIRSLKNYDEHENRYGSIFSVSGPVVVAANMLGCSMYELVRV 52
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 27.1 bits (57), Expect = 0.34
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -3
Query: 187 ADPDIFSAVTTGPDTAKTYPN 125
AD +F AV PDTAK YPN
Sbjct: 33 ADAVVFKAVGVAPDTAK-YPN 52
>SPBC19C2.11c |||mitochondrial outer membrane protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 178 DIFSAVTTGPDTAKTYPNLSSFSSLAIVLK 89
D + GP +T+PN+ S +SLA+ K
Sbjct: 244 DTHLPIKMGPLDVQTHPNIRSIASLALSRK 273
>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 464
Score = 23.4 bits (48), Expect = 4.2
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +1
Query: 145 YLDPSSLPKRCPDLLCTSW 201
+LDP+ P PD+ W
Sbjct: 192 HLDPADFPYSTPDIFADDW 210
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 23.4 bits (48), Expect = 4.2
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 190 IADPDIFSAVT-TGPDTAKTYPNLSSFSSLAIVLKP 86
IADP+I SAVT +A+ + S +S I L+P
Sbjct: 273 IADPEIESAVTLMNIQSARRFIEASKSASDGIQLQP 308
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 23.4 bits (48), Expect = 4.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 185 RSGHLFGSDDGSRYGEDISEPL 120
R G LFG D G YG+ S+PL
Sbjct: 52 RDGQLFGWDIGYDYGK-ASQPL 72
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 23.0 bits (47), Expect = 5.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 164 SDDGSRYGEDISEPLLILXIGDRPQTAFARH 72
S R G D++ ++IL + P TA RH
Sbjct: 685 SGRAGRRGLDVTGTVIILSRSELPDTASLRH 715
>SPBC56F2.11 |met6||homoserine
O-acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 489
Score = 23.0 bits (47), Expect = 5.5
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -2
Query: 167 GSDDGSRYGEDISEPLLILXIGDRPQTAFARHFELVILYP 48
GSD +D+S P+L+L I F E+ +P
Sbjct: 380 GSDSPKEVMKDLSLPVLVLGIESDGLFTFDEQVEIAKSFP 419
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 148 LDPSSLPKRCPDLLCTSWSVS 210
+ PSS PK DL CT S
Sbjct: 83 IHPSSTPKNYHDLNCTKGETS 103
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 22.6 bits (46), Expect = 7.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 184 DPDIFSAVTTGPDTAKTYPNLSSFSSLAIV 95
DP+ FSA T P+ S SSL+ V
Sbjct: 460 DPNAFSASTPASGAVSRTPSSVSLSSLSNV 489
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 22.6 bits (46), Expect = 7.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 194 VHSRSGHLFGSDDGSRYGEDISEPLLILXIGDRPQTAFARHFELV 60
+H+R G + SR+GE+ + L I+ G AF EL+
Sbjct: 316 MHAREGLM----KSSRFGEEFASLLPIIERGGSDSAAFDNVIELL 356
>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 316
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 178 DIFSAVTTGPDTAKTYPNLSSFS 110
D FS+ + D AKT+ NL S
Sbjct: 212 DFFSSDLSADDFAKTFGNLKEIS 234
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 203 DQLVHSRSGHLFGSDDGSRYGED 135
D L+ ++ GH F +D G G D
Sbjct: 661 DNLLITKDGHFFHADFGYILGRD 683
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 145 YLDPSSLPKRCPDLLCTSW 201
YL+ L RC +CTSW
Sbjct: 14 YLEADEL--RCKSTVCTSW 30
>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 253
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +3
Query: 69 KMASKGGLRTIANXENEERFGYVFAVSGPVVTAEK 173
K+ S+ R E +E Y F+ +GP + K
Sbjct: 87 KLLSQNNYRLPDYLEEDEIVSYTFSKTGPTTSKNK 121
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +3
Query: 153 PVVTAEKMSGSAMYELVRV 209
PVV A+ + G +YE++ +
Sbjct: 424 PVVCAQSIDGGCVYEVINL 442
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 864,736
Number of Sequences: 5004
Number of extensions: 12246
Number of successful extensions: 45
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -