Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30h19
         (210 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412...    51   1e-07
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043...    44   2e-05
11_06_0690 + 26303733-26306540                                         28   1.2  
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201...    27   1.6  
02_01_0299 + 2001938-2002510,2002821-2003033,2003129-2003333,200...    26   3.6  
03_05_0877 + 28443481-28443538,28443641-28443911,28444028-284442...    25   8.4  

>02_01_0561 +
           4120268-4120339,4121462-4121588,4121715-4121770,
           4121841-4121912,4122017-4122128,4122247-4122284,
           4122412-4122513,4122619-4122675,4122755-4122826,
           4122992-4123093,4123210-4123405,4123988-4124094,
           4124497-4124691,4124771-4124857,4124905-4124913,
           4125599-4125703,4126067-4126164,4126250-4126328,
           4126912-4127000,4127086-4127200
          Length = 629

 Score = 50.8 bits (116), Expect = 1e-07
 Identities = 25/46 (54%), Positives = 30/46 (65%)
 Frame = +3

Query: 72  MASKGGLRTIANXENEERFGYVFAVSGPVVTAEKMSGSAMYELVRV 209
           MA    + T  + E E  +GYV  VSGPVV A+ M G+AMYELVRV
Sbjct: 1   MAFGDRITTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRV 46


>06_03_1014 -
           26902971-26903085,26903182-26903270,26904302-26904380,
           26904488-26904585,26904848-26904952,26905031-26905117,
           26905218-26905412,26905890-26905996,26906559-26906754,
           26906865-26906966,26907100-26907171,26907404-26907505,
           26907638-26907675,26907769-26907880,26907972-26908028,
           26908122-26908177,26908283-26908409,26908856-26908910,
           26908919-26909049
          Length = 640

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 21/29 (72%), Positives = 23/29 (79%)
 Frame = +3

Query: 123 RFGYVFAVSGPVVTAEKMSGSAMYELVRV 209
           R G V AVSGPVV A+ M G+AMYELVRV
Sbjct: 56  RIGGVLAVSGPVVVADGMGGAAMYELVRV 84


>11_06_0690 + 26303733-26306540
          Length = 935

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 137 DISEPLLILXIGDRPQTAFARHFELVILYPRRERWKRRTENGG 9
           D + PL +  +G RP+ +  R  + V+ Y  R   +   +NGG
Sbjct: 827 DFAAPLTMALLGRRPRPSRVRQRQQVVPYSPRRSNRLAAKNGG 869


>07_03_0537 -
           19218461-19218982,19219482-19219868,19219993-19220154,
           19220464-19221117,19221233-19221277,19223300-19223845,
           19223930-19224307,19224642-19225313,19225373-19225456
          Length = 1149

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
 Frame = +1

Query: 148 LDPSSLPKRC--PDLLCTS--WSVS 210
           +DP+S+PK C  PD LC S  W VS
Sbjct: 856 VDPASIPKHCAAPDNLCFSRTWLVS 880


>02_01_0299 +
           2001938-2002510,2002821-2003033,2003129-2003333,
           2003485-2003560,2003665-2003800,2003905-2004009,
           2004095-2004172,2004264-2004353,2004441-2004506,
           2004836-2004892,2004996-2005073,2005165-2005212,
           2005330-2005401
          Length = 598

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 69  KMASKGGLRTIANXENEERFGYVFAVSGPV 158
           K +  G + T+A+ E EE+ G +F   GP+
Sbjct: 124 KFSRLGQMSTVASPEQEEQEGVLFRGGGPM 153


>03_05_0877 +
           28443481-28443538,28443641-28443911,28444028-28444242,
           28444329-28445057,28445143-28445297,28445384-28445965
          Length = 669

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 84  GGLRTIANXENEERFGYVFAVSGPVV-TAEKMSGSA 188
           GG RT    + EE+   V  V GP++    K SG A
Sbjct: 621 GGARTAEKEDYEEKLKEVEQVCGPIIKQVYKKSGDA 656


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,978,904
Number of Sequences: 37544
Number of extensions: 90212
Number of successful extensions: 226
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 14,793,348
effective HSP length: 49
effective length of database: 12,953,692
effective search space used: 259073840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)