Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30h19
         (210 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    54   1e-08
U42835-5|AAO61444.1|  517|Caenorhabditis elegans Uncoordinated p...    27   1.8  
U42835-4|AAA83588.1|  611|Caenorhabditis elegans Uncoordinated p...    27   1.8  
AF324437-1|AAK11613.1|  611|Caenorhabditis elegans UNC-78 protein.     27   1.8  
Z81099-1|CAB03187.1|  600|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z73898-4|CAA98068.2|  453|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z92829-14|CAB07342.2|  337|Caenorhabditis elegans Hypothetical p...    25   7.3  
AF039042-3|AAP40513.1|  359|Caenorhabditis elegans Serpentine re...    25   9.7  
AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical ...    25   9.7  

>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 24/31 (77%), Positives = 28/31 (90%)
 Frame = +3

Query: 117 EERFGYVFAVSGPVVTAEKMSGSAMYELVRV 209
           E  +G+V+ VSGPVVTAEKM+GSAMYELVRV
Sbjct: 4   ESSYGFVYGVSGPVVTAEKMAGSAMYELVRV 34


>U42835-5|AAO61444.1|  517|Caenorhabditis elegans Uncoordinated
           protein 78, isoform b protein.
          Length = 517

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 15  ILGSSFPSFSSRIKNN*FKMASKGGLRTIANXENEERFGYVF 140
           IL ++ P FS  +K+  +   SK   R  A  E  ERFG+VF
Sbjct: 94  ILKTTIPVFSGPVKDISWDSESK---RIAAVGEGRERFGHVF 132


>U42835-4|AAA83588.1|  611|Caenorhabditis elegans Uncoordinated
           protein 78, isoform a protein.
          Length = 611

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 15  ILGSSFPSFSSRIKNN*FKMASKGGLRTIANXENEERFGYVF 140
           IL ++ P FS  +K+  +   SK   R  A  E  ERFG+VF
Sbjct: 94  ILKTTIPVFSGPVKDISWDSESK---RIAAVGEGRERFGHVF 132


>AF324437-1|AAK11613.1|  611|Caenorhabditis elegans UNC-78 protein.
          Length = 611

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 15  ILGSSFPSFSSRIKNN*FKMASKGGLRTIANXENEERFGYVF 140
           IL ++ P FS  +K+  +   SK   R  A  E  ERFG+VF
Sbjct: 94  ILKTTIPVFSGPVKDISWDSESK---RIAAVGEGRERFGHVF 132


>Z81099-1|CAB03187.1|  600|Caenorhabditis elegans Hypothetical
           protein K08F9.2 protein.
          Length = 600

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 15  ILGSSFPSFSSRIKNN*FKMASKGGLRTIANXENEERFGYVF 140
           IL  + P FS  +K+  +   SK   R  A  E +ERFG+VF
Sbjct: 94  ILKHTIPVFSGPVKDIAWDSESK---RIAAVGEGKERFGHVF 132


>Z73898-4|CAA98068.2|  453|Caenorhabditis elegans Hypothetical
           protein ZK822.4 protein.
          Length = 453

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 9   SAILGSSFPSFSSRIKNN*FKMASKGGLRTIANXENEERFGYVFAVSGPVV 161
           S   GSS  +F S ++N+ F  A  GG+ T    +N     +  AV+   V
Sbjct: 34  SVSAGSSGSNFLSGLQNSSFGQAVMGGINTYNQAKNSSGGNWQTAVANSSV 84


>Z92829-14|CAB07342.2|  337|Caenorhabditis elegans Hypothetical
           protein F10A3.8 protein.
          Length = 337

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 172 FSAVTTGPDTAKTYPNLSSFSSLAI 98
           FS  T G   AKTY +L   SSLA+
Sbjct: 217 FSLATLGYFGAKTYFHLKKISSLAV 241


>AF039042-3|AAP40513.1|  359|Caenorhabditis elegans Serpentine
           receptor, class w protein101 protein.
          Length = 359

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 9   SAILGSSFPSFSSRIKNN*FKMASKG--GLRTIANXENEERFGYVFAVSGPVVTAEKMS 179
           S I G SFP  +  +     K+       +RT++  ENEE++G    + G +  A  +S
Sbjct: 224 SLIPGISFPLLAVVLIREIRKLEKSRTRAIRTLSTAENEEKYGLSTKLIGLMTVAAFLS 282


>AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical
           protein Y47D7A.6 protein.
          Length = 446

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 199 NSYIADPDIFSAVTTGPDTAKTYPNLSSFSS 107
           N Y   P   +A  T P  A TYP  +S+ +
Sbjct: 253 NDYAQKPAYSTAPPTYPTEAPTYPTTASYET 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,837,972
Number of Sequences: 27780
Number of extensions: 71177
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)