Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30h19
         (210 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   1.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   2.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   2.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   2.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       19   6.4  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               19   8.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   8.5  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 1.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 187 ADPDIFSAVTTGPDTAKTYPNLSS 116
           A+P    A TT P TA    +LS+
Sbjct: 22  ANPGTIQACTTSPATASLESSLSA 45


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.6 bits (41), Expect = 2.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 170 FGSDDGSRYGEDISEP 123
           FG DD S YG    EP
Sbjct: 11  FGVDDVSLYGTPKEEP 26


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 2.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 170 FGSDDGSRYGEDISEP 123
           FG DD S YG    EP
Sbjct: 11  FGVDDVSLYGTPKEEP 26


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 2.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 170 FGSDDGSRYGEDISEP 123
           FG DD S YG    EP
Sbjct: 11  FGVDDVSLYGTPKEEP 26


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.0 bits (37), Expect = 6.4
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +3

Query: 114 NEERFGY 134
           N+ERFGY
Sbjct: 117 NQERFGY 123


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +2

Query: 170 KDVRICYVRVG 202
           KD+R C + +G
Sbjct: 35  KDIRYCIIHMG 45


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -2

Query: 53  YPRRERW 33
           YPRR+ W
Sbjct: 724 YPRRKEW 730


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,834
Number of Sequences: 438
Number of extensions: 845
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3039192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)