Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30h18
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces pombe|...    26   6.1  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.1  

>SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 165 LKSVGK*NCIIMDYESGVSPIDRGRWCSQTSYDLPIFLN 49
           L +V K   + + Y + V P  +  WC      LP+F N
Sbjct: 13  LANVAKNETLFVAYLASVDPRTKQPWCPTVRAALPLFNN 51


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = +3

Query: 93  YLCQLDLHHFHNP*LCNFIYRPILSCTKHGIFLRN*TRTSYI*KNYIKLSMNYVIAHFSQ 272
           Y C   L HF  P      + P     +  +     T+  YI  + I+LSM Y++   + 
Sbjct: 302 YACCAALRHFMIPVSSRAHFAPTAILLQEKLASSRFTQLHYISASMIRLSMPYILCELAD 361

Query: 273 N 275
           +
Sbjct: 362 H 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,852
Number of Sequences: 5004
Number of extensions: 55580
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)