Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30h18
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77663-8|CAB01205.2|  337|Caenorhabditis elegans Hypothetical pr...    33   0.15 
U50301-12|AAB37053.2|  486|Caenorhabditis elegans Hypothetical p...    28   5.7  
AL117200-5|CAB55057.1|  293|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z77663-8|CAB01205.2|  337|Caenorhabditis elegans Hypothetical
           protein F53F4.9 protein.
          Length = 337

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 33  VAIFVDLKI*ANHMRSGYTTYLCQLDLHHFHNP*LCNFIYRPILSCTKHGIF 188
           +A F DL I   H+ +G+T       L  +  P +C FIY   +S   HG++
Sbjct: 55  LACFTDLFIQMRHIPAGFTMAYLSRGLCTYFGPHVCYFIYSINISLVAHGLW 106


>U50301-12|AAB37053.2|  486|Caenorhabditis elegans Hypothetical
           protein F20D6.10 protein.
          Length = 486

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 464 SVSCVKNVFKSCIRFRLKH 520
           S SC KN+F+ C+ F+  H
Sbjct: 72  SSSCAKNIFRDCLIFQFNH 90


>AL117200-5|CAB55057.1|  293|Caenorhabditis elegans Hypothetical
           protein Y50E8A.9 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 275 LNFTTFKINGQYNNIFYGY 331
           ++FT F+ NGQ NN++ GY
Sbjct: 251 IDFTFFENNGQQNNMYRGY 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,611,299
Number of Sequences: 27780
Number of extensions: 288441
Number of successful extensions: 477
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)