Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30h18
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    25   0.53 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   2.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.2  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   8.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.7  

>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 571 VERFLGLYF**YCIHKKSIIKLIYCYCKNMFFLS 672
           +++  G YF  YC+H K +IK   C   N F +S
Sbjct: 10  LKKDFGTYFQQYCLHHKILIKKNKC---NAFIVS 40


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +1

Query: 97  SVNWTYTTFIIHDYAISF---TDRF*VVQN 177
           +V W   TF+ H Y + F   ++++ ++QN
Sbjct: 44  NVYWNVPTFMCHKYGLRFEEVSEKYGILQN 73


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 248 LRDSSFFSKLNFTTFKINGQ 307
           L  S+F S   +TTF ING+
Sbjct: 224 LTSSTFASDPRYTTFTINGE 243


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/45 (24%), Positives = 18/45 (40%)
 Frame = -1

Query: 216 YN*SVFNFSKKSHVLYNLKSVGK*NCIIMDYESGVSPIDRGRWCS 82
           YN S +N +    + YN+  + +    +  Y     P   G W S
Sbjct: 89  YNYSNYNNNNYKQLCYNINHIEQIPVPVPVYYGNFPPRPMGSWIS 133


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 276 NFEKNELSRNSCL 238
           NF ++E  RNSCL
Sbjct: 368 NFNESENRRNSCL 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,645
Number of Sequences: 438
Number of extensions: 3517
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)