Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30h02
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    29   0.28 
SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ...    28   0.87 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    28   0.87 
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    28   0.87 
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.5  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   3.5  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.1  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   8.1  

>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 201 RERNETYVQIVLISCRNQGIAVEPPTQRHLSDGHGTVPGT 320
           + R E+Y Q++   C NQG+AV+ P  RH+      +P T
Sbjct: 202 KAREESY-QVLSALCGNQGVAVDIP--RHIKFKGSVIPAT 238


>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
           Orc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 264

 Score = 27.9 bits (59), Expect = 0.87
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 277 VGGSTAIPWFRQLINTICT 221
           +GGSTAIP+ +QL+  + T
Sbjct: 117 LGGSTAIPYVKQLVKAVVT 135


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 27.9 bits (59), Expect = 0.87
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 234 TRFVHMFHYVLYIKYLRHTIECE 166
           T+FVH+FH  LY  Y   T  C+
Sbjct: 872 TQFVHIFHASLYTLYYVETTGCD 894


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.9 bits (59), Expect = 0.87
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 198 YRERNETYVQIVLISCRNQGIAVEPPTQRHLSDGHGTVPGTP 323
           Y ++ E Y  I L +C+  GI+  PP+  +LS     +  TP
Sbjct: 290 YVKKLEKYWSIYLSNCKKLGISTLPPS-NYLSPNRAELESTP 330


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 439 IPIYKQTTST*LQFSVNNGCRTNAWKL 359
           +P+Y  T    + F +  GC  N W L
Sbjct: 174 LPLYSVTLVIFVVFQIGGGCSKNIWSL 200


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = -3

Query: 379 RTNAWKLSKRQHQLLLN-G*GVPGTVPWPSDRWRWVGGSTAIPW---FRQLINTICTYVS 212
           +T + K      Q+ +N G GVP   P P  +W  V     + W   + + IN    YV 
Sbjct: 348 KTGSLKRRVYPEQITINIGEGVPVPEPLPGHQWAEVKHDNTVTWLATWHENINNNVKYVF 407

Query: 211 L 209
           L
Sbjct: 408 L 408


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 105 YNILMYKSAFNFNVESSECYSHIQLY 182
           Y+  + KSA NF +ES +C   + +Y
Sbjct: 300 YSERLVKSADNFTIESIQCLLILSIY 325


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -1

Query: 270 VQQQSPGSDS*LTRFVHMFHYVLYIKYLRHTIECESSIRN 151
           +  ++PG+D     F +  H+  +I YL +  EC     N
Sbjct: 864 INHKAPGADLFRFSFDYGLHWSEWIDYLSNKTECTEFANN 903


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,078
Number of Sequences: 5004
Number of extensions: 39400
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)