Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30h02
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0190 - 21444764-21445150,21445552-21445842                       34   0.070
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069...    29   2.6  
01_06_0794 + 32050413-32050523,32050663-32051391                       28   4.6  
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443...    27   6.1  
05_03_0476 + 14499226-14499381,14499726-14499750,14500388-145007...    27   6.1  
01_06_0667 - 31048987-31049134,31049630-31049865,31050720-310509...    27   8.1  

>09_06_0190 - 21444764-21445150,21445552-21445842
          Length = 225

 Score = 33.9 bits (74), Expect = 0.070
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = -2

Query: 275 RWFNSNPLVPTAN*HDLYICFI-TFSISNTYDIQLNVRVAFGTFNV 141
           RW N+ P V T +  +LY+CF+ + SI+  Y ++L + + + T NV
Sbjct: 81  RWINA-PFVRTVSVANLYLCFVRSMSIAKRYVLRLFISLKYVTANV 125


>03_06_0766 - 36106116-36106230,36106598-36106716,36106880-36106960,
            36107062-36107118,36107350-36107373,36107810-36107909,
            36107983-36108053,36108132-36108236,36108674-36108847,
            36109406-36109555,36109701-36109871,36109968-36110024,
            36110107-36110142,36110165-36110357,36110439-36110578,
            36110960-36111166,36111442-36111498,36111711-36111809,
            36112289-36112408,36112865-36113032,36113450-36113510,
            36113611-36113720,36114132-36114263,36114344-36114511,
            36115118-36115182,36115242-36115372,36115450-36115487,
            36116272-36116373,36116480-36116537,36117479-36117580,
            36117695-36117909,36118158-36118307,36118699-36118858,
            36118984-36119042,36119287-36119443,36119536-36119681,
            36121376-36121648,36122889-36122891
          Length = 1457

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 250  FRQLINTICTYVSLRSLYQILTTY 179
            + ++IN +CT +S++ LY+I T Y
Sbjct: 1344 YDEIINDLCTALSVQQLYKICTQY 1367


>01_06_0794 + 32050413-32050523,32050663-32051391
          Length = 279

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 213 ETYVQIVLISCRNQGIAVEPPTQRHLSDGH 302
           E  ++ +L+ CRN G   +  T  H SD H
Sbjct: 74  EQILRSILVPCRNAGYGCDAKTAYHDSDSH 103


>08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,
            4437721-4437990,4438168-4438605,4438772-4439043,
            4439126-4439274,4439339-4439470,4439554-4439880,
            4439963-4440357,4440551-4440861,4441304-4441394,
            4441806-4441847
          Length = 1686

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -1

Query: 321  GFPAQYRGRLTDG----VGSVVQQQSPGSDS*LTRFVHMFHYVLYIKYLR 184
            GF   Y+GRL DG    V  + +Q++PG +      V M    L+   LR
Sbjct: 1330 GFSKVYKGRLADGSLVAVKRLKEQRTPGGELQFQTEVEMISMALHRNLLR 1379


>05_03_0476 +
           14499226-14499381,14499726-14499750,14500388-14500734,
           14501608-14501886
          Length = 268

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 14/66 (21%)
 Frame = -2

Query: 416 LYVTAVLSEQWLSNKRVEVIEAATSV-------ITQWLGG-----SRHST-VAV*QM-AL 279
           +Y   +L  +WLSN+ V +   ATS+       + +WL       SR +T + V +M  L
Sbjct: 58  IYKEMILLARWLSNQYVAISRTATSIGVREMILLARWLSNQYVAISRTATSIGVREMILL 117

Query: 278 GRWFNS 261
            RWF++
Sbjct: 118 ARWFSN 123


>01_06_0667 -
           31048987-31049134,31049630-31049865,31050720-31050926,
           31051005-31051197,31051282-31051652
          Length = 384

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/45 (42%), Positives = 22/45 (48%)
 Frame = -2

Query: 371 RVEVIEAATSVITQWLGGSRHSTVAV*QMALGRWFNSNPLVPTAN 237
           RVE IE       +++GG  HSTV     AL R F S  LV   N
Sbjct: 49  RVEAIERQFMEWVRYMGGLEHSTV---HHALARAFPSYSLVVDKN 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,055,016
Number of Sequences: 37544
Number of extensions: 240761
Number of successful extensions: 605
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)