Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30h02
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30317-4|CAB54306.1|  378|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p...    27   5.5  
U21308-12|AAB93315.2|  360|Caenorhabditis elegans Hypothetical p...    27   9.7  
AF025451-2|AAK68202.1|  612|Caenorhabditis elegans Hypothetical ...    27   9.7  
AF025451-1|AAB71201.1|  610|Caenorhabditis elegans Hypothetical ...    27   9.7  

>Z30317-4|CAB54306.1|  378|Caenorhabditis elegans Hypothetical
           protein T16G12.8 protein.
          Length = 378

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 105 YNILMYKSAFNFNVESSECYSHIQLYVVSI 194
           YNILMY SA + NV++ EC      Y + +
Sbjct: 68  YNILMYYSASSTNVKTLECAQKCSKYGIVV 97


>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical
           protein C26C6.1a protein.
          Length = 1883

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 117 MYKSAFNFNVESSECY 164
           MY +AF++N+ESSE Y
Sbjct: 414 MYSNAFDYNLESSEVY 429


>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
           protein C26C6.1a protein.
          Length = 1883

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 117 MYKSAFNFNVESSECY 164
           MY +AF++N+ESSE Y
Sbjct: 414 MYSNAFDYNLESSEVY 429


>U21308-12|AAB93315.2|  360|Caenorhabditis elegans Hypothetical
           protein ZK1290.9 protein.
          Length = 360

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 394 VNNGCRTNAWKLSKRQHQLLLN 329
           V+NGC+ + WK S    +++LN
Sbjct: 141 VDNGCQVDQWKSSSGYKKIILN 162


>AF025451-2|AAK68202.1|  612|Caenorhabditis elegans Hypothetical
           protein C24H12.5b protein.
          Length = 612

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
 Frame = +3

Query: 198 YRERNETYVQIVL-ISCRNQGIAVEPPTQRHLSDGHGTVPGTP*PLSNN 341
           Y  RN    QI    SCRN   AV PP         G     P P +NN
Sbjct: 6   YNPRNRLKTQIKRRSSCRNILNAVPPPPPTDFEGLEGFTDSCPAPTANN 54


>AF025451-1|AAB71201.1|  610|Caenorhabditis elegans Hypothetical
           protein C24H12.5a protein.
          Length = 610

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
 Frame = +3

Query: 198 YRERNETYVQIVL-ISCRNQGIAVEPPTQRHLSDGHGTVPGTP*PLSNN 341
           Y  RN    QI    SCRN   AV PP         G     P P +NN
Sbjct: 6   YNPRNRLKTQIKRRSSCRNILNAVPPPPPTDFEGLEGFTDSCPAPTANN 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,950,460
Number of Sequences: 27780
Number of extensions: 230910
Number of successful extensions: 446
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)