Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30h02
         (489 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.0  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
 Frame = -3

Query: 307 VPWPSD---RWRWVGGSTAIPWFRQLINTI 227
           +PW  +     +W  G T  PW   ++  +
Sbjct: 335 IPWDKNVEALAKWANGQTGFPWIDAIMTQL 364


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 372 FVRQPLFTENCSHVEVVC 425
           +VR+  F+E+C   E++C
Sbjct: 426 YVREIAFSESCLPEEILC 443


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 432 FTNKQPLRDCSSQ*TMAVEQTRGSYRSGNISYYSMVRGFPA 310
           FT+K   R  + +   A+ Q +G+  S    +YS+   +PA
Sbjct: 402 FTSKGEYRMSTGEMKEAITQWQGNPISPLNDWYSLASSWPA 442


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +1

Query: 244 VGTRGLLLNHRPNAICQTATVLCREPPN 327
           V  R LL       I  T  +LC  PP+
Sbjct: 427 VSDRALLCVFFLTTIVSTTVILCGSPPS 454


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,939
Number of Sequences: 438
Number of extensions: 3228
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)