Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30g24
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    29   0.95 
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    25   8.9  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   8.9  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   8.9  

>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 147 DLRRNHHLRDLNGPLIHAVSD 209
           D RR+HH +++ G L+H  SD
Sbjct: 451 DHRRSHHQQNITGDLVHVYSD 471


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 506 LNMYFE*FCIFHFDKLSTSPDSNQGKLIIT 417
           +N+Y   FC     +L T P  N  K+IIT
Sbjct: 255 INIYTLPFCSDSIPRLQTLPALNSSKIIIT 284


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 691 KNTINGYADIFFCIFFSGSQPFTT 620
           K T++  +++F C F SGS P+ +
Sbjct: 511 KGTLHRVSEVFDCWFESGSMPYAS 534


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +3

Query: 129 NSGNVFDLRRNHHLRDLNGPLIHAVSDNSIDSGSEARILQGWGQSEAPNLRPIIGAG 299
           N+G + +   ++ L DLNG     V    +  G + + +      +AP   PI   G
Sbjct: 639 NAGKIVEQGSHNELLDLNGAYARLVEAQKLSGGEKDQEMVEEELEDAPREIPITSFG 695


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,090
Number of Sequences: 5004
Number of extensions: 61722
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)