Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30g24
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0662 + 35377974-35378270,35378354-35378623,35378795-353789...    31   1.00 
03_03_0145 + 14833043-14833113,14833544-14833662,14833834-148339...    30   2.3  
03_06_0646 + 35260497-35262371,35262500-35262683,35262906-352630...    29   4.0  
12_01_0363 + 2750982-2751479                                           28   7.0  
09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,388...    28   7.0  
03_01_0575 + 4247431-4247489,4248475-4248547,4248792-4249229,425...    28   7.0  
12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,132...    28   9.3  
10_01_0062 - 818396-818538,819482-819693,819936-820420,820540-82...    28   9.3  

>03_06_0662 +
           35377974-35378270,35378354-35378623,35378795-35378973,
           35380073-35380116,35380295-35380384,35380472-35380588,
           35380679-35380803,35380883-35381155,35381253-35381386,
           35381518-35381604,35381714-35381831
          Length = 577

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 258 QSEAPNLRPIIGAGHSTSCPENSGTITISHVHRIAAVWDTEE 383
           QS   N+     +G + SC E SGTI ++    + A +DTEE
Sbjct: 52  QSCVGNIPIYACSGTAISCQEGSGTIFLTSASLVRAFYDTEE 93


>03_03_0145 +
           14833043-14833113,14833544-14833662,14833834-14833991,
           14834147-14834587
          Length = 262

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 117 SDLENSGNVFDLRRNHHLRDLNGPLIHAVSDNSIDSGSEARILQGWGQSEAPNLRPI 287
           S L+N  N   + RN  L+D NG L   +SD   +    A    GWG     +  P+
Sbjct: 108 STLQNESNYVTMERNE-LQDENGALRSEISDLQNELRMRATGSPGWGHGATGSPLPV 163


>03_06_0646 +
           35260497-35262371,35262500-35262683,35262906-35263007,
           35263101-35263231,35263315-35263584,35263765-35263943,
           35264229-35264275,35264452-35264541,35264596-35264645,
           35264673-35264725,35264886-35265009,35265094-35265369,
           35265460-35265593,35265672-35265758,35265864-35265977,
           35266180-35266309
          Length = 1281

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 294 AGHSTSCPENSGTITISHVHRIAAVWDTEE 383
           +G +  C E SGTI ++    + A +DTEE
Sbjct: 729 SGIAIECQEGSGTIFLTSASLVTAFYDTEE 758


>12_01_0363 + 2750982-2751479
          Length = 165

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 259 SRKPQIYGPLLVQATAPPVPKTVELSPLA 345
           S+K +  GP  V++ + PVP+T  L+P A
Sbjct: 51  SKKKKRAGPAAVRSASRPVPETAPLTPTA 79


>09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,
            3881287-3883916
          Length = 1163

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 385  FSSVSQTAAMRCTWLMV-IVPLFSGQEVLWPAPIMGRKFGASDWPQP 248
            F+S+ +   MR  +    ++ L     +L+P P M   F   +WP P
Sbjct: 929  FASLLEMVTMRLLYYRAPLILLVFNSSILFPLPYMNLYFVTGNWPTP 975


>03_01_0575 +
           4247431-4247489,4248475-4248547,4248792-4249229,
           4252122-4253339
          Length = 595

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 118 QTWKTVEMFLTYDAITTFGISMVLSFTLSVIIL 216
           + W+ V    TYD  T      VL+FT+SV I+
Sbjct: 137 ELWRKVWGEATYDLATVLAFLAVLAFTISVYIM 169


>12_01_0179 -
           1319291-1319332,1319884-1320579,1322759-1323207,
           1323291-1324903,1324991-1325077,1326983-1327251
          Length = 1051

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 229 AKRGFFRVGASRKPQIYGPLLVQATAPPVPK 321
           ++R F  +  S +P+I  PLLV +   P+P+
Sbjct: 58  SRRSFISILPSPRPEISAPLLVASIGVPLPR 88


>10_01_0062 -
           818396-818538,819482-819693,819936-820420,820540-820696,
           820787-820924,821127-821703,821978-822018,822679-822809
          Length = 627

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
 Frame = +1

Query: 13  FCQLFCL*HHEERS------YDSFFYKH-ACLCYAYLICVIVQTWKTVEMFLTY 153
           F   +CL ++ ERS        SFF+ + AC+CYA+ + + +  ++   +F+ +
Sbjct: 521 FVFAYCLYYYRERSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAALLFVRH 574


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,827,870
Number of Sequences: 37544
Number of extensions: 342520
Number of successful extensions: 923
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)