Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30g16
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0483 + 19546295-19546397,19547163-19547482,19547606-195486...    29   2.8  
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645...    29   2.8  

>12_02_0483 +
           19546295-19546397,19547163-19547482,19547606-19548611,
           19549890-19549985,19550500-19551551
          Length = 858

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -1

Query: 470 NLTIHTKSI*LT*FKTTHNIVLEYVFIN*NPSSRMGVHKSTFNDTQRISK 321
           N+    K I  + F+  HN++   ++I  NP+  +  H  T N  +R S+
Sbjct: 296 NIINDPKGITRSKFRLFHNVLFSKIYIQPNPNKTLCYHSQTENSFKRKSQ 345


>11_03_0212 -
           11761856-11762037,11762302-11762398,11763571-11764545,
           11766172-11766263,11766450-11766510
          Length = 468

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -1

Query: 470 NLTIHTKSI*LT*FKTTHNIVLEYVFIN*NPSSRMGVHKSTFNDTQRISK 321
           N+    K I  + F+  HN++   ++I  NP+  +  H  T N  +R S+
Sbjct: 224 NIIDDPKGITRSKFRLFHNVLFSKIYIQPNPNKTLCYHSRTKNSFERKSQ 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,272,033
Number of Sequences: 37544
Number of extensions: 254409
Number of successful extensions: 347
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)