Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30g16
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   3.0  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 76  HYKFHSKEI*RVKSPRQVYGGI 141
           +  +H KE+ R  S R+ YGG+
Sbjct: 252 YISWHQKELVRRDSRRKNYGGV 273


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/43 (20%), Positives = 22/43 (51%)
 Frame = -2

Query: 226 DNTVILLITRRSYNAYSYYAISVPRIIRVFPHIPDEGI*HVIF 98
           + T+I  +    +NA  Y +   P +++ F ++P + +   +F
Sbjct: 302 EETIISSVFTTRHNATCYLSHVDPDVVQYFGYLPQDMVGRSLF 344


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/43 (20%), Positives = 22/43 (51%)
 Frame = -2

Query: 226 DNTVILLITRRSYNAYSYYAISVPRIIRVFPHIPDEGI*HVIF 98
           + T+I  +    +NA  Y +   P +++ F ++P + +   +F
Sbjct: 8   EETIISSVFTTRHNATCYLSHVDPDVVQYFGYLPQDMVGRSLF 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,317
Number of Sequences: 438
Number of extensions: 4163
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)