Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30g01
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    30   0.40 
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    27   3.7  
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.9  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   8.6  

>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = -3

Query: 671 IMRRNEDKSQQSQGKNHAG*NRSHSSDNQLHK*PQKNNNQRSRIKFNKRPERR*FISE*D 492
           +  R+ D+S +S    H      H  D+     P  + + RSR ++ +R  R     + D
Sbjct: 146 VRSRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRRRYEERSSRSSRAHDYD 205

Query: 491 YK 486
           Y+
Sbjct: 206 YE 207


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 563 NNNQRSRIKFNKRPERR*FI-SE*DYKLSILLF 468
           NNNQ  RIK++  P+R  FI SE D  L I  F
Sbjct: 98  NNNQELRIKYSTSPQR--FIESEADLDLEIRSF 128


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +3

Query: 549 SLIIVFLWSLM*LIIRRMTSILPCMVFTLALLRFILI 659
           +LIIV  +SL+  I+ + TSI   +  TLA++ F L+
Sbjct: 66  TLIIVLYFSLV--IVNKTTSIALALFKTLAVISFFLL 100


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = -1

Query: 664 GVMRINLNKAKVKTMQGRIEVILRIINYISDHKKTIIKDQESSSINAQNGDNLYRSEIIS 485
           GV +I     +  T+   +E+   I NY +D  KTI  D  +       G+ LY + ++ 
Sbjct: 30  GVSQIFERLDEGMTITKYMELYTAIHNYCADASKTITVDNFNDQTANVLGEALYNNLVLY 89

Query: 484 CQYY 473
            + Y
Sbjct: 90  LEEY 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,051
Number of Sequences: 5004
Number of extensions: 54701
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)