Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30g01
         (745 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC093088-1|AAH93088.1|  294|Homo sapiens LRRIQ1 protein protein.       32   2.5  
BC125127-1|AAI25128.1|  629|Homo sapiens PRPF39 protein protein.       30   7.6  
BC125126-1|AAI25127.1|  629|Homo sapiens PRPF39 protein protein.       30   7.6  
BC051886-1|AAH51886.1|  479|Homo sapiens PRPF39 protein protein.       30   7.6  
AK001990-1|BAA92024.1|  272|Homo sapiens protein ( Homo sapiens ...    30   7.6  

>BC093088-1|AAH93088.1|  294|Homo sapiens LRRIQ1 protein protein.
          Length = 294

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 23/99 (23%), Positives = 44/99 (44%)
 Frame = -1

Query: 745 DTELHCVHTERDVKTKQFMPRFG*R*CGVMRINLNKAKVKTMQGRIEVILRIINYISDHK 566
           D E   +  +RD + KQF      R C + +  + K K++ +Q   +  +R ++   + +
Sbjct: 183 DKEKQTLKAQRDREEKQFQEEEEKRHCWMKQFKVEKKKLENIQ---KEYIRNLHLQMEEE 239

Query: 565 KTIIKDQESSSINAQNGDNLYRSEIISCQYYYFLNNTKY 449
           +T  KDQ+    N+        +  I  +Y  F+   KY
Sbjct: 240 RTRFKDQQEKEKNSLLKQQNNAAVKIQAKYKAFVAYQKY 278


>BC125127-1|AAI25128.1|  629|Homo sapiens PRPF39 protein protein.
          Length = 629

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 14/48 (29%), Positives = 30/48 (62%)
 Frame = -1

Query: 658 MRINLNKAKVKTMQGRIEVILRIINYISDHKKTIIKDQESSSINAQNG 515
           MRI  ++ KV+ ++     + +++N   +H+ T++K+Q+S    A+NG
Sbjct: 525 MRITFSQRKVEFLEDFGSDVNKLLNAYDEHQ-TLLKEQDSLKRKAENG 571


>BC125126-1|AAI25127.1|  629|Homo sapiens PRPF39 protein protein.
          Length = 629

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 14/48 (29%), Positives = 30/48 (62%)
 Frame = -1

Query: 658 MRINLNKAKVKTMQGRIEVILRIINYISDHKKTIIKDQESSSINAQNG 515
           MRI  ++ KV+ ++     + +++N   +H+ T++K+Q+S    A+NG
Sbjct: 525 MRITFSQRKVEFLEDFGSDVNKLLNAYDEHQ-TLLKEQDSLKRKAENG 571


>BC051886-1|AAH51886.1|  479|Homo sapiens PRPF39 protein protein.
          Length = 479

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 14/48 (29%), Positives = 30/48 (62%)
 Frame = -1

Query: 658 MRINLNKAKVKTMQGRIEVILRIINYISDHKKTIIKDQESSSINAQNG 515
           MRI  ++ KV+ ++     + +++N   +H+ T++K+Q+S    A+NG
Sbjct: 375 MRITFSQRKVEFLEDFGSDVNKLLNAYDEHQ-TLLKEQDSLKRKAENG 421


>AK001990-1|BAA92024.1|  272|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11128 fis, clone PLACE1006236. ).
          Length = 272

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 14/48 (29%), Positives = 30/48 (62%)
 Frame = -1

Query: 658 MRINLNKAKVKTMQGRIEVILRIINYISDHKKTIIKDQESSSINAQNG 515
           MRI  ++ KV+ ++     + +++N   +H+ T++K+Q+S    A+NG
Sbjct: 169 MRITFSQRKVEFLEDFGSDVNKLLNAYDEHQ-TLLKEQDSLKRKAENG 215


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,889,761
Number of Sequences: 237096
Number of extensions: 1690335
Number of successful extensions: 2120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2120
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)