Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30f24
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical...    32   0.21 
Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical p...    29   1.1  
Z68006-7|CAA91995.2|  783|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF497831-1|AAM18109.1|  783|Caenorhabditis elegans putative Na-H...    29   1.5  
Z29645-1|CAA82753.1|  522|Caenorhabditis elegans kinesin light c...    28   3.4  
U40029-3|AAA81124.1|  269|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z82284-1|CAB05287.1|  226|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z68748-6|CAD27621.1|   88|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z29644-1|CAA82752.1|  540|Caenorhabditis elegans kinesin light c...    27   6.0  
U55369-14|AAN84862.1|  540|Caenorhabditis elegans Kinesin light ...    27   6.0  
U55369-13|AAN84863.1|  501|Caenorhabditis elegans Kinesin light ...    27   6.0  
U55369-12|AAK52182.1|  522|Caenorhabditis elegans Kinesin light ...    27   6.0  
U55369-11|AAT68902.1|  531|Caenorhabditis elegans Kinesin light ...    27   6.0  

>AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical
           protein F35F10.12 protein.
          Length = 471

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +2

Query: 113 DPDPFFAQPT-VGNGYEPIDNRPYIVNPPKDYN--PNGNGYEPIDNGAYYVDPPQGRPYF 283
           DP+   +QPT +G G  P    P  V PP  Y   P  +G    DNGA     P G PY 
Sbjct: 345 DPNLPPSQPTPIGGGVAPAGVAPAGVVPPPGYGFLPMTDG---TDNGAGDTPYPVGPPYP 401

Query: 284 KPTPFPGARG 313
              P P   G
Sbjct: 402 SDVPAPYPSG 411


>Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 134 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEP 232
           QP VGN Y+P    P   +PP  Y     GY P
Sbjct: 91  QPLVGNSYDP----PVRFDPPYAYRATATGYMP 119


>Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical
           protein M04G12.4b protein.
          Length = 550

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 134 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEP 232
           QP VGN Y+P    P   +PP  Y     GY P
Sbjct: 62  QPLVGNSYDP----PVRFDPPYAYRATATGYMP 90


>Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 134 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEP 232
           QP VGN Y+P    P   +PP  Y     GY P
Sbjct: 91  QPLVGNSYDP----PVRFDPPYAYRATATGYMP 119


>Z68006-7|CAA91995.2|  783|Caenorhabditis elegans Hypothetical
           protein K09C8.1 protein.
          Length = 783

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 130 KEWIGVIDHNLSVGHSQQSEDENHEEFHFYMITSYH 23
           +E+I V+ H  S  HS +     H+E H   + S+H
Sbjct: 65  EEFIKVLKHRQSKDHSGEHVGNEHDESHGISVVSWH 100


>AF497831-1|AAM18109.1|  783|Caenorhabditis elegans putative Na-H
           exchanger isoform 7 protein.
          Length = 783

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 130 KEWIGVIDHNLSVGHSQQSEDENHEEFHFYMITSYH 23
           +E+I V+ H  S  HS +     H+E H   + S+H
Sbjct: 65  EEFIKVLKHRQSKDHSGEHVGNEHDESHGISVVSWH 100


>Z29645-1|CAA82753.1|  522|Caenorhabditis elegans kinesin light
           chain (isoform 2) protein.
          Length = 522

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -1

Query: 196 GRINDVRAVVNRFVAVSYSRLGKEWIGVID--HNLSVGHSQQSEDENHEEFHFYMITSYH 23
           G+  +V     R + +  S+LG +   V +  +NLS  + +Q + +  EE +  ++T  H
Sbjct: 367 GKYEEVEKYYKRALEIYESKLGPDDPNVANTKNNLSSAYLKQGKYKEAEELYKQILTRAH 426

Query: 22  RRKY 11
            R++
Sbjct: 427 EREF 430


>U40029-3|AAA81124.1|  269|Caenorhabditis elegans Hypothetical
           protein F10G7.6 protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 158 EPIDNRPYI-VNPPKDYNPNGNGYEPIDNG 244
           EP D  P + V PP  + PN NG  P  NG
Sbjct: 239 EPDDPAPPLPVAPPPLHGPNNNGNGPAQNG 268


>Z82284-1|CAB05287.1|  226|Caenorhabditis elegans Hypothetical
           protein T27E7.1 protein.
          Length = 226

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = +2

Query: 137 PTVGNGYEPIDNRPYIVNPPKDYNPNGNGYE--PIDNGAYYVDPPQGRPYFKPT--PFPG 304
           P  G  + P  N   + N P  +     GY   P         PP+G  Y++P   P+  
Sbjct: 36  PQPGASFPP--NMNPVTNGPGSWTQKPGGYNNGPGSGSFKSTKPPRGLVYYQPKNYPYKP 93

Query: 305 ARGGK 319
            +GGK
Sbjct: 94  GKGGK 98


>Z68748-6|CAD27621.1|   88|Caenorhabditis elegans Hypothetical
           protein F13H10.6 protein.
          Length = 88

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +2

Query: 155 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 295
           Y+P +  P     P    P   GY P   G YY    QG PY+   P
Sbjct: 3   YQPYNQPPPYTQQPGYPPPGSAGYVPQ-QGGYYPQGQQG-PYYPQQP 47


>Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical
           protein K02B12.2 protein.
          Length = 196

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 189 ILPKITTLMETATNLSTTVHITWTLPKAD 275
           I+   TT +++ T+LS   + TW LPK D
Sbjct: 19  IVNHYTTHVKSTTDLSKCGNCTWVLPKLD 47


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical protein
            C27B7.4 protein.
          Length = 1274

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 218  NGYEPIDNGAYYVDPPQGRPYFKPTPFPGA 307
            NGY   +NG    +P Q  P   P+ FPGA
Sbjct: 1146 NGYPNNNNGGAIGNPQQMLPPRDPSAFPGA 1175


>Z29644-1|CAA82752.1|  540|Caenorhabditis elegans kinesin light
           chain (isoform 1) protein.
          Length = 540

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -1

Query: 196 GRINDVRAVVNRFVAVSYSRLGKEWIGVID--HNLSVGHSQQSEDENHEEFHFYMITSYH 23
           G+  +V     R + +  S+LG +   V    +NLS  + +Q + +  EE +  ++T  H
Sbjct: 346 GKYEEVEKYYKRALEIYESKLGPDDPNVAKTKNNLSSAYLKQGKYKEAEELYKQILTRAH 405

Query: 22  RRKY 11
            R++
Sbjct: 406 EREF 409


>U55369-14|AAN84862.1|  540|Caenorhabditis elegans Kinesin light
           chain protein 2,isoform b protein.
          Length = 540

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -1

Query: 196 GRINDVRAVVNRFVAVSYSRLGKEWIGVID--HNLSVGHSQQSEDENHEEFHFYMITSYH 23
           G+  +V     R + +  S+LG +   V    +NLS  + +Q + +  EE +  ++T  H
Sbjct: 346 GKYEEVEKYYKRALEIYESKLGPDDPNVAKTKNNLSSAYLKQGKYKEAEELYKQILTRAH 405

Query: 22  RRKY 11
            R++
Sbjct: 406 EREF 409


>U55369-13|AAN84863.1|  501|Caenorhabditis elegans Kinesin light
           chain protein 2,isoform c protein.
          Length = 501

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -1

Query: 196 GRINDVRAVVNRFVAVSYSRLGKEWIGVID--HNLSVGHSQQSEDENHEEFHFYMITSYH 23
           G+  +V     R + +  S+LG +   V    +NLS  + +Q + +  EE +  ++T  H
Sbjct: 346 GKYEEVEKYYKRALEIYESKLGPDDPNVAKTKNNLSSAYLKQGKYKEAEELYKQILTRAH 405

Query: 22  RRKY 11
            R++
Sbjct: 406 EREF 409


>U55369-12|AAK52182.1|  522|Caenorhabditis elegans Kinesin light
           chain protein 2,isoform a protein.
          Length = 522

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -1

Query: 196 GRINDVRAVVNRFVAVSYSRLGKEWIGVID--HNLSVGHSQQSEDENHEEFHFYMITSYH 23
           G+  +V     R + +  S+LG +   V    +NLS  + +Q + +  EE +  ++T  H
Sbjct: 367 GKYEEVEKYYKRALEIYESKLGPDDPNVAKTKNNLSSAYLKQGKYKEAEELYKQILTRAH 426

Query: 22  RRKY 11
            R++
Sbjct: 427 EREF 430


>U55369-11|AAT68902.1|  531|Caenorhabditis elegans Kinesin light
           chain protein 2,isoform d protein.
          Length = 531

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -1

Query: 196 GRINDVRAVVNRFVAVSYSRLGKEWIGVID--HNLSVGHSQQSEDENHEEFHFYMITSYH 23
           G+  +V     R + +  S+LG +   V    +NLS  + +Q + +  EE +  ++T  H
Sbjct: 346 GKYEEVEKYYKRALEIYESKLGPDDPNVAKTKNNLSSAYLKQGKYKEAEELYKQILTRAH 405

Query: 22  RRKY 11
            R++
Sbjct: 406 EREF 409


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,213,495
Number of Sequences: 27780
Number of extensions: 244270
Number of successful extensions: 676
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)