Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30f23
(372 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protei... 32 0.11
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 31 0.20
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 31 0.20
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 31 0.20
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 31 0.20
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 31 0.35
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 31 0.35
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 31 0.35
U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein. 30 0.46
U50311-12|AAA92315.1| 169|Caenorhabditis elegans Hypothetical p... 30 0.46
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 30 0.61
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 30 0.61
Z79756-10|CAL36507.1| 80|Caenorhabditis elegans Hypothetical p... 29 1.1
U41274-5|AAA82461.2| 571|Caenorhabditis elegans Nematode astaci... 28 2.4
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical p... 27 3.2
Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical p... 27 3.2
Z71178-16|CAD44088.1| 328|Caenorhabditis elegans Hypothetical p... 27 3.2
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 27 3.2
Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical p... 27 3.2
AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical ... 27 3.2
AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical ... 27 3.2
AL021478-2|CAF32232.1| 328|Caenorhabditis elegans Hypothetical ... 27 3.2
AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical ... 27 3.2
Z75714-6|CAE54930.1| 532|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z75714-5|CAB00065.2| 581|Caenorhabditis elegans Hypothetical pr... 27 5.7
AC026301-13|AAP13737.1| 766|Caenorhabditis elegans Hypothetical... 27 5.7
Z81592-8|CAB04730.1| 365|Caenorhabditis elegans Hypothetical pr... 26 7.5
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 26 7.5
AF026214-6|AAB71316.3| 875|Caenorhabditis elegans Hypothetical ... 26 7.5
U56966-2|AAA98718.1| 755|Caenorhabditis elegans Unidentified vi... 26 9.9
>AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protein 3
protein.
Length = 777
Score = 32.3 bits (70), Expect = 0.11
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 137 VSKAQFGPGSYWSGGHSAELIPRHEIMNNKTNQRFILPRFTH 12
+S + GPG SG E P H+I+ T+Q IL +F H
Sbjct: 575 MSNEENGPGPSSSGESMKERKPEHKILQVNTHQMIILLQFNH 616
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 31.5 bits (68), Expect = 0.20
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 91 CPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKC 234
C D Y GPNC + +C A C CKPG + + C
Sbjct: 416 CSKDSY--GPNCEKQAMCDWNHASECNPETGSCVCKPGRTGKNCSEPC 461
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +1
Query: 88 ECPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKCVKE 243
+C +QY G +C+ C + + C CKPG D+ C K+
Sbjct: 370 KCDAEQY--GADCSKTCTCVRENTLMCAPNTGFCRCKPGFYGDNCELACSKD 419
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +1
Query: 91 CPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKC 234
CP Y G C + +C+ H +C C+PG + + KC
Sbjct: 676 CPAGSY--GDGC--QQVCSCADGHGCDPTTGECICEPGYHGKTCSEKC 719
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 31.5 bits (68), Expect = 0.20
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 91 CPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKC 234
C D Y GPNC + +C A C CKPG + + C
Sbjct: 416 CSKDSY--GPNCEKQAMCDWNHASECNPETGSCVCKPGRTGKNCSEPC 461
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +1
Query: 88 ECPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKCVKE 243
+C +QY G +C+ C + + C CKPG D+ C K+
Sbjct: 370 KCDAEQY--GADCSKTCTCVRENTLMCAPNTGFCRCKPGFYGDNCELACSKD 419
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +1
Query: 91 CPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKC 234
CP Y G C + +C+ H +C C+PG + + KC
Sbjct: 676 CPAGSY--GDGC--QQVCSCADGHGCDPTTGECICEPGYHGKTCSEKC 719
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 31.5 bits (68), Expect = 0.20
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 91 CPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKC 234
C D Y GPNC + +C A C CKPG + + C
Sbjct: 416 CSKDSY--GPNCEKQAMCDWNHASECNPETGSCVCKPGRTGKNCSEPC 461
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +1
Query: 88 ECPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKCVKE 243
+C +QY G +C+ C + + C CKPG D+ C K+
Sbjct: 370 KCDAEQY--GADCSKTCTCVRENTLMCAPNTGFCRCKPGFYGDNCELACSKD 419
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +1
Query: 91 CPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKC 234
CP Y G C + +C+ H +C C+PG + + KC
Sbjct: 676 CPAGSY--GDGC--QQVCSCADGHGCDPTTGECICEPGYHGKTCSEKC 719
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 31.5 bits (68), Expect = 0.20
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 91 CPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKC 234
C D Y GPNC + +C A C CKPG + + C
Sbjct: 416 CSKDSY--GPNCEKQAMCDWNHASECNPETGSCVCKPGRTGKNCSEPC 461
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +1
Query: 88 ECPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKCVKE 243
+C +QY G +C+ C + + C CKPG D+ C K+
Sbjct: 370 KCDAEQY--GADCSKTCTCVRENTLMCAPNTGFCRCKPGFYGDNCELACSKD 419
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +1
Query: 91 CPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKC 234
CP Y G C + +C+ H +C C+PG + + KC
Sbjct: 676 CPAGSY--GDGC--QQVCSCADGHGCDPTTGECICEPGYHGKTCSEKC 719
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 30.7 bits (66), Expect = 0.35
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Frame = +1
Query: 88 ECPPDQYDPGPNCAFETICALRSAHSNRKHY-C-DC----------WCKPGLIRDSIAHK 231
ECP +P P C + L S SN +Y C +C +C G D + K
Sbjct: 826 ECPSLDLNPNPECISTELAVLGSVASNEDNYVCINCPLGYEGNKCEYCSDGFFEDPLTGK 885
Query: 232 CVKEC 246
C+ EC
Sbjct: 886 CI-EC 889
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 30.7 bits (66), Expect = 0.35
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Frame = +1
Query: 88 ECPPDQYDPGPNCAFETICALRSAHSNRKHY-C-DC----------WCKPGLIRDSIAHK 231
ECP +P P C + L S SN +Y C +C +C G D + K
Sbjct: 826 ECPSLDLNPNPECISTELAVLGSVASNEDNYVCINCPLGYEGNKCEYCSDGFFEDPLTGK 885
Query: 232 CVKEC 246
C+ EC
Sbjct: 886 CI-EC 889
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 30.7 bits (66), Expect = 0.35
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Frame = +1
Query: 88 ECPPDQYDPGPNCAFETICALRSAHSNRKHY-C-DC----------WCKPGLIRDSIAHK 231
ECP +P P C + L S SN +Y C +C +C G D + K
Sbjct: 826 ECPSLDLNPNPECISTELAVLGSVASNEDNYVCINCPLGYEGNKCEYCSDGFFEDPLTGK 885
Query: 232 CVKEC 246
C+ EC
Sbjct: 886 CI-EC 889
>U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein.
Length = 780
Score = 30.3 bits (65), Expect = 0.46
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 137 VSKAQFGPGSYWSGGHSAELIPRHEIMNNKTNQRFILPRFTH 12
+S + GPG SG E P H+I+ T+Q IL + H
Sbjct: 575 MSNEENGPGPSGSGESMKERKPEHKILQVNTHQMIILLQLNH 616
>U50311-12|AAA92315.1| 169|Caenorhabditis elegans Hypothetical
protein C25E10.10 protein.
Length = 169
Score = 30.3 bits (65), Expect = 0.46
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 187 CWCKPGLIRDSIAHKCVKE 243
C CK GL+RDS KCV++
Sbjct: 110 CQCKKGLVRDSATGKCVEK 128
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 29.9 bits (64), Expect = 0.61
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = +1
Query: 82 SAECPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKCVKEC 246
S E P + G NC F CA ++ + C CKPG H C + C
Sbjct: 703 SCEKPCPHFTFGKNCRFPCKCARENSEGCDEITGKCRCKPGY----YGHHCKRMC 753
Score = 25.8 bits (54), Expect = 9.9
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +1
Query: 70 LGISSAECPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKC--VKE 243
+G + A+C QYD A C ++ +YC CW PG + C + E
Sbjct: 106 VGFTGAKC---QYDANECMANNGGCEHECVNTIGTYYCRCW--PGFELSGDGNTCSDIDE 160
Query: 244 C 246
C
Sbjct: 161 C 161
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 29.9 bits (64), Expect = 0.61
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = +1
Query: 82 SAECPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKCVKEC 246
S E P + G NC F CA ++ + C CKPG H C + C
Sbjct: 703 SCEKPCPHFTFGKNCRFPCKCARENSEGCDEITGKCRCKPGY----YGHHCKRMC 753
Score = 25.8 bits (54), Expect = 9.9
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +1
Query: 70 LGISSAECPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKC--VKE 243
+G + A+C QYD A C ++ +YC CW PG + C + E
Sbjct: 106 VGFTGAKC---QYDANECMANNGGCEHECVNTIGTYYCRCW--PGFELSGDGNTCSDIDE 160
Query: 244 C 246
C
Sbjct: 161 C 161
>Z79756-10|CAL36507.1| 80|Caenorhabditis elegans Hypothetical
protein F53C11.9 protein.
Length = 80
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = +1
Query: 187 CWCKPGLIRDSIAHKCV--KECPK 252
C CK G + DS KC+ K+CPK
Sbjct: 55 CECKQGFVVDSNTKKCIDLKKCPK 78
>U41274-5|AAA82461.2| 571|Caenorhabditis elegans Nematode astacin
protease protein15 protein.
Length = 571
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 148 LRSAHSNRKHYCDCWCKPGLIRDSIAHKCVKECP 249
L S S+RKH+C W G + K CP
Sbjct: 532 LPSECSDRKHFCSHWKSAGFCEGIFMNYMKKNCP 565
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 88 ECPPDQYDPGPNCAFETICALRSAHSNRKHYC 183
ECPPD P + + E+ C +R + R C
Sbjct: 192 ECPPDSIRPPESISKESCCPIRQSCKCRGSIC 223
>Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 88 ECPPDQYDPGPNCAFETICALRSAHSNRKHYC 183
ECPPD P + + E+ C +R + R C
Sbjct: 126 ECPPDSIRPPESISKESCCPIRQSCKCRGSIC 157
>Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 88 ECPPDQYDPGPNCAFETICALRSAHSNRKHYC 183
ECPPD P + + E+ C +R + R C
Sbjct: 126 ECPPDSIRPPESISKESCCPIRQSCKCRGSIC 157
>Z71178-16|CAD44088.1| 328|Caenorhabditis elegans Hypothetical
protein B0024.14c protein.
Length = 328
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 88 ECPPDQYDPGPNCAFETICALRSAHSNRKHYC 183
ECPPD P + + E+ C +R + R C
Sbjct: 126 ECPPDSIRPPESISKESCCPIRQSCKCRGSIC 157
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 88 ECPPDQYDPGPNCAFETICALRSAHSNRKHYC 183
ECPPD P + + E+ C +R + R C
Sbjct: 192 ECPPDSIRPPESISKESCCPIRQSCKCRGSIC 223
>Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 88 ECPPDQYDPGPNCAFETICALRSAHSNRKHYC 183
ECPPD P + + E+ C +R + R C
Sbjct: 126 ECPPDSIRPPESISKESCCPIRQSCKCRGSIC 157
>AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 88 ECPPDQYDPGPNCAFETICALRSAHSNRKHYC 183
ECPPD P + + E+ C +R + R C
Sbjct: 126 ECPPDSIRPPESISKESCCPIRQSCKCRGSIC 157
>AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 88 ECPPDQYDPGPNCAFETICALRSAHSNRKHYC 183
ECPPD P + + E+ C +R + R C
Sbjct: 126 ECPPDSIRPPESISKESCCPIRQSCKCRGSIC 157
>AL021478-2|CAF32232.1| 328|Caenorhabditis elegans Hypothetical
protein B0024.14c protein.
Length = 328
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 88 ECPPDQYDPGPNCAFETICALRSAHSNRKHYC 183
ECPPD P + + E+ C +R + R C
Sbjct: 126 ECPPDSIRPPESISKESCCPIRQSCKCRGSIC 157
>AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 88 ECPPDQYDPGPNCAFETICALRSAHSNRKHYC 183
ECPPD P + + E+ C +R + R C
Sbjct: 126 ECPPDSIRPPESISKESCCPIRQSCKCRGSIC 157
>Z75714-6|CAE54930.1| 532|Caenorhabditis elegans Hypothetical
protein ZC434.9b protein.
Length = 532
Score = 26.6 bits (56), Expect = 5.7
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = +1
Query: 19 KRGKMNLWFVLLFIISCLGISSAECPPDQYDPGPNCAFET--ICALRSAHSNRKHYCDCW 192
KR + LW ++L + A+ P ++ A + + ALR H +H D W
Sbjct: 4 KRTRNTLWLLILISAFAINAEIADDKPPKFQVLRAHATDVPQLKALRDIHERTQHDLDFW 63
Query: 193 CKPGLI 210
P +
Sbjct: 64 QTPSKV 69
>Z75714-5|CAB00065.2| 581|Caenorhabditis elegans Hypothetical
protein ZC434.9a protein.
Length = 581
Score = 26.6 bits (56), Expect = 5.7
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = +1
Query: 19 KRGKMNLWFVLLFIISCLGISSAECPPDQYDPGPNCAFET--ICALRSAHSNRKHYCDCW 192
KR + LW ++L + A+ P ++ A + + ALR H +H D W
Sbjct: 4 KRTRNTLWLLILISAFAINAEIADDKPPKFQVLRAHATDVPQLKALRDIHERTQHDLDFW 63
Query: 193 CKPGLI 210
P +
Sbjct: 64 QTPSKV 69
>AC026301-13|AAP13737.1| 766|Caenorhabditis elegans Hypothetical
protein Y54F10BM.1 protein.
Length = 766
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 98 GGHSAELIPRHEIMNNKTNQRF 33
G H++E + RH +MN NQ+F
Sbjct: 62 GEHASEYVRRHLLMNITKNQKF 83
>Z81592-8|CAB04730.1| 365|Caenorhabditis elegans Hypothetical
protein T16G1.8 protein.
Length = 365
Score = 26.2 bits (55), Expect = 7.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 55 FIISCLGISSAECPPDQYDPGPNCAFETICALRSAHSNRKHY 180
F+ G CP P P CA +TICA ++ S+ Y
Sbjct: 18 FMFGGSGGGGCGCPCPVPPPVPICAPQTICAQQAPCSSSSSY 59
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
F54F3.1 protein.
Length = 1584
Score = 26.2 bits (55), Expect = 7.5
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Frame = +1
Query: 91 CPPDQYDPGPNCAFET-ICALRSA---HSNRKHYCDCWCKPGLIRDSIAHKCVKECPK 252
C P Y P NC E IC + H + Y +C CKPG D V E P+
Sbjct: 1148 CVP--YAPATNCNLEPRICHANAQCVMHHDTNAY-ECICKPGSSGDGYTKCDVIETPR 1202
>AF026214-6|AAB71316.3| 875|Caenorhabditis elegans Hypothetical
protein F52H2.7 protein.
Length = 875
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 58 IISCLGISSAECPPDQYDPGP-NCAFETICALRSAHSN 168
++S +S+ +CPP QY GP N ++C S+ N
Sbjct: 551 LVSEFILSTQQCPPPQYYAGPRNFIQVSVCKKISSDPN 588
>U56966-2|AAA98718.1| 755|Caenorhabditis elegans Unidentified
vitellogenin-linkedtranscript protein 3 protein.
Length = 755
Score = 25.8 bits (54), Expect = 9.9
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -2
Query: 155 LRNAQIVSKAQFGPGSYWSGGHSAELIPRHEIMNNKTNQRFILPRFTHSD 6
+RN IV K +YWS G RHE N T L F ++D
Sbjct: 307 VRNRPIVMKTLSFACNYWSSGKLRAYFLRHE--NYTTGLGAFLENFPNAD 354
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,633,813
Number of Sequences: 27780
Number of extensions: 176137
Number of successful extensions: 606
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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