Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30f21
(682 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 36 0.035
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 36 0.035
U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical pr... 35 0.062
U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr... 35 0.062
Z79598-2|CAB01864.1| 738|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z34802-6|CAB54282.1| 594|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z34802-5|CAA84337.1| 610|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical pr... 33 0.25
Z79598-1|CAB01867.3| 586|Caenorhabditis elegans Hypothetical pr... 32 0.33
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p... 29 2.3
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr... 29 2.3
AC006661-2|AAK31542.1| 253|Caenorhabditis elegans Spliceosome-a... 29 2.3
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF304125-1|AAG50238.1| 542|Caenorhabditis elegans 1D304 protein. 29 4.1
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 29 4.1
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 29 4.1
AC024201-8|AAF36020.1| 542|Caenorhabditis elegans Hypothetical ... 29 4.1
Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical pr... 28 5.4
AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein... 28 5.4
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of... 28 7.1
AF022974-5|AAC48036.3| 347|Caenorhabditis elegans Seven tm rece... 28 7.1
Z66565-4|CAA91480.1| 384|Caenorhabditis elegans Hypothetical pr... 27 9.4
AL033514-39|CAA22095.2| 401|Caenorhabditis elegans Hypothetical... 27 9.4
AF025460-5|AAB70988.5| 584|Caenorhabditis elegans Polh (dna pol... 27 9.4
AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated... 27 9.4
AB244413-1|BAE72703.1| 584|Caenorhabditis elegans DNA polymeras... 27 9.4
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 35.5 bits (78), Expect = 0.035
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 508 LHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKLLLLTLS 681
L + + + + I I P AF G+H+L+ + L NN+ L +TF L LL L+
Sbjct: 310 LKNLTRLDLSKNIITEIQPKAFLGLHNLHTLVLYGNNITDLKSDTFEGLGSLQLLLLN 367
Score = 33.9 bits (74), Expect = 0.11
Identities = 31/123 (25%), Positives = 55/123 (44%)
Frame = +1
Query: 313 VLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLVVENADPRYPINLDDFM 492
+L E CP +C+C V + E+ Q +D + L +++ + I +DF
Sbjct: 9 LLIPESATCPAECVC-VDRTVSCVGQQLTEV-PQNIPNDTIRLDLQDNEIT-KIGPNDFS 65
Query: 493 FKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKLLLL 672
L + ++++++ I I +F + L + LS N ++ L F NN KL L
Sbjct: 66 ----SLMNLKALQLMDNQIVTIHNQSFSSLVFLQKLRLSRNRIRHLPDNVFQNNLKLTHL 121
Query: 673 TLS 681
LS
Sbjct: 122 DLS 124
Score = 32.7 bits (71), Expect = 0.25
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +1
Query: 502 LGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKLLLLTL 678
LGLH + T+ + + I + + F G+ L + L+ N L + TF + KL +L+L
Sbjct: 332 LGLHNLHTLVLYGNNITDLKSDTFEGLGSLQLLLLNANQLTCIRRGTFDHVPKLSMLSL 390
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 35.5 bits (78), Expect = 0.035
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 508 LHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKLLLLTLS 681
L + + + + I I P AF G+H+L+ + L NN+ L +TF L LL L+
Sbjct: 310 LKNLTRLDLSKNIITEIQPKAFLGLHNLHTLVLYGNNITDLKSDTFEGLGSLQLLLLN 367
Score = 33.9 bits (74), Expect = 0.11
Identities = 31/123 (25%), Positives = 55/123 (44%)
Frame = +1
Query: 313 VLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLVVENADPRYPINLDDFM 492
+L E CP +C+C V + E+ Q +D + L +++ + I +DF
Sbjct: 9 LLIPESATCPAECVC-VDRTVSCVGQQLTEV-PQNIPNDTIRLDLQDNEIT-KIGPNDFS 65
Query: 493 FKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKLLLL 672
L + ++++++ I I +F + L + LS N ++ L F NN KL L
Sbjct: 66 ----SLMNLKALQLMDNQIVTIHNQSFSSLVFLQKLRLSRNRIRHLPDNVFQNNLKLTHL 121
Query: 673 TLS 681
LS
Sbjct: 122 DLS 124
Score = 32.7 bits (71), Expect = 0.25
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +1
Query: 502 LGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKLLLLTL 678
LGLH + T+ + + I + + F G+ L + L+ N L + TF + KL +L+L
Sbjct: 332 LGLHNLHTLVLYGNNITDLKSDTFEGLGSLQLLLLNANQLTCIRRGTFDHVPKLSMLSL 390
>U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical
protein ZK682.5 protein.
Length = 575
Score = 34.7 bits (76), Expect = 0.062
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = +1
Query: 514 QVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKLLLLTLS 681
Q+ + + + + + + F G++DLY+++L N + ++ P FAN + L +S
Sbjct: 331 QIQAIVLNKNRLSQVRADFFEGLNDLYSIDLQGNRIDNVQPLGFANLPAISHLDIS 386
>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical
protein C56E6.6 protein.
Length = 1102
Score = 34.7 bits (76), Expect = 0.062
Identities = 17/64 (26%), Positives = 36/64 (56%)
Frame = +1
Query: 490 MFKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKLLL 669
MF ++ ++ + ++ I I+ +F + +L + LS+NN++++ TF+N + L
Sbjct: 433 MFGSSSSSELKSLNLAHNKIHSISSRSFSDLDNLQQLRLSHNNIRTITSMTFSNLRNLRY 492
Query: 670 LTLS 681
L LS
Sbjct: 493 LDLS 496
>Z79598-2|CAB01864.1| 738|Caenorhabditis elegans Hypothetical
protein C44H4.2 protein.
Length = 738
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 505 GLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKLLLLTLS 681
GL + V ++ I I NAF+ L ++L+ N L + P TF LLL+ LS
Sbjct: 314 GLPNLQQVSFRDNQIKTINRNAFYDAASLVMLDLAKNQLTEIAPTTFLAQLNLLLVDLS 372
Score = 31.5 bits (68), Expect = 0.58
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 505 GLHQVATVKIVNSTIGYIAPNA-FHGVHDLYAVNLSNNNLKSLHPETFANNK 657
GL + + + N++I I F ++ LY +NL +N + S+H TF N K
Sbjct: 97 GLPNLLRLDLSNNSIVEIQEQEIFPNLNKLYDINLGSNKIFSIHTSTFQNVK 148
>Z34802-6|CAB54282.1| 594|Caenorhabditis elegans Hypothetical
protein M88.6b protein.
Length = 594
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +1
Query: 505 GLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKLLLLTL 678
G+ + + + N + I AF G++ L + LSNNNL+++ F+ K L +L L
Sbjct: 197 GMKNLKKLTLQNCNLEIIQKGAFRGLNSLEQLILSNNNLENIDWTIFSALKNLRVLDL 254
>Z34802-5|CAA84337.1| 610|Caenorhabditis elegans Hypothetical
protein M88.6a protein.
Length = 610
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +1
Query: 505 GLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKLLLLTL 678
G+ + + + N + I AF G++ L + LSNNNL+++ F+ K L +L L
Sbjct: 197 GMKNLKKLTLQNCNLEIIQKGAFRGLNSLEQLILSNNNLENIDWTIFSALKNLRVLDL 254
>Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical
protein K07A12.2 protein.
Length = 961
Score = 32.7 bits (71), Expect = 0.25
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Frame = +1
Query: 340 PRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLV-VENADPRYPINLDDFMFKKLGLHQ 516
P C C +S+ C+ ++ T I V D + +N D + L +
Sbjct: 27 PEKCDCKISKSMIILSCNGEDVKT------IAQTVGTSQIDELHILNGTDVKIESLPFNG 80
Query: 517 VATVKIVNSTIGYIAPNAFHGVH-DLYAVNLSNNNLKSLHPETFANNKKLLLLTLS 681
+ T+ I+NST+ +P A+ V + + ++ N LK++ F N L+ + L+
Sbjct: 81 LRTIAILNSTLQSFSPTAWRHVEATIEHITINGNELKTV--PVFGNLSTLMSMNLN 134
>Z79598-1|CAB01867.3| 586|Caenorhabditis elegans Hypothetical
protein C44H4.1 protein.
Length = 586
Score = 32.3 bits (70), Expect = 0.33
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 508 LHQVATVKIVNSTIGYIAPNAFHGVHD---LYAVNLSNNNLKSLHPETFANNKKLLLLTL 678
L Q+ + + ++ I Y+ NAF H L ++LS NNL ++HP + L L+L
Sbjct: 131 LKQLKILSLPDNLIEYVQDNAFLSYHSRDSLLKLDLSANNLTAIHPTGLLGLENLSQLSL 190
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 517 VATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANN 654
+ ++ I N+ I + AF G + + L NN L+S HP TF N
Sbjct: 61 IDSLTISNTPIEKMPGYAFQGFQ-IKKLFLRNNGLRSFHPNTFTGN 105
>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +1
Query: 418 FGDDILDLVVENADPRYPI-NLDDFMFKKLGLHQVATVKIV-NSTIGYIAPNAFHGVHDL 591
FG L+ E PR+ I ++ MF++ +K + NS + Y+A N FH +
Sbjct: 2091 FGQTPSQLLTEAHPPRHSIMSMAPTMFRRHDEDLCMMMKYISNSPVVYLAANTFHQLPQP 2150
Query: 592 YAVNLSNNNLKSLH 633
V ++ N + SL+
Sbjct: 2151 TVVGVAQNLVFSLN 2164
>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
F10F2.1 protein.
Length = 2507
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +1
Query: 418 FGDDILDLVVENADPRYPI-NLDDFMFKKLGLHQVATVKIV-NSTIGYIAPNAFHGVHDL 591
FG L+ E PR+ I ++ MF++ +K + NS + Y+A N FH +
Sbjct: 2091 FGQTPSQLLTEAHPPRHSIMSMAPTMFRRHDEDLCMMMKYISNSPVVYLAANTFHQLPQP 2150
Query: 592 YAVNLSNNNLKSLH 633
V ++ N + SL+
Sbjct: 2151 TVVGVAQNLVFSLN 2164
>AC006661-2|AAK31542.1| 253|Caenorhabditis elegans
Spliceosome-associated proteinprotein 1 protein.
Length = 253
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 523 TVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP-ETFANNKKLLLLT 675
T+ + N+ I YIAP+ + +L + L+NNN+ L E A KKL +T
Sbjct: 68 TLYLHNNRINYIAPDIATKLPNLKTLALTNNNICELGDIEPLAECKKLEYVT 119
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +3
Query: 564 QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 650
Q FP P PL SQP QQQP P CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
protein C12C8.3a protein.
Length = 1147
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +3
Query: 564 QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 650
Q FP P PL SQP QQQP P CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375
>AF304125-1|AAG50238.1| 542|Caenorhabditis elegans 1D304 protein.
Length = 542
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +1
Query: 526 VKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 636
+ I +S + +I P+AF+ + L ++LSNN L+ + P
Sbjct: 314 LSISSSALTHIHPSAFNPIPPLSHLDLSNNELRYVAP 350
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +3
Query: 564 QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 650
Q FP P PL SQP QQQP P CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +3
Query: 564 QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 650
Q FP P PL SQP QQQP P CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375
>AC024201-8|AAF36020.1| 542|Caenorhabditis elegans Hypothetical
protein Y71F9B.8 protein.
Length = 542
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +1
Query: 526 VKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 636
+ I +S + +I P+AF+ + L ++LSNN L+ + P
Sbjct: 314 LSISSSALTHIHPSAFNPIPPLSHLDLSNNELRYVAP 350
>Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical
protein C44H4.3 protein.
Length = 680
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1
Query: 478 LDDFMFKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNK 657
LD+ + ++ QV + N T I F G+ + +NL +N + ++ P FA
Sbjct: 268 LDNGVLEQFKQLQVLDLSFNNFTD--ITKEMFEGLESIQHLNLDSNRISAVAPGAFAGTP 325
Query: 658 KLLL 669
LLL
Sbjct: 326 LLLL 329
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 505 GLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKLL 666
GL + + + + I I AF + L VNL N + S+ +TFAN K L
Sbjct: 130 GLRVLNILSLKCNKIENITTKAFVNMTSLIDVNLGCNQICSMAADTFANVKMSL 183
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 538 NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKLLLLTLS 681
N+ + ++ G L V+LSNNN++ +H +F + L L L+
Sbjct: 333 NNCLTEVSQQTLKGAPFLRMVSLSNNNIREVHELSFDHLPNLHTLDLA 380
>AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein
protein.
Length = 680
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1
Query: 478 LDDFMFKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNK 657
LD+ + ++ QV + N T I F G+ + +NL +N + ++ P FA
Sbjct: 268 LDNGVLEQFKQLQVLDLSFNNFTD--ITKEMFEGLESIQHLNLDSNRISAVAPGAFAGTP 325
Query: 658 KLLL 669
LLL
Sbjct: 326 LLLL 329
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 505 GLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKLL 666
GL + + + + I I AF + L VNL N + S+ +TFAN K L
Sbjct: 130 GLRVLNILSLKCNKIENITTKAFVNMTSLIDVNLGCNQICSMAADTFANVKMSL 183
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 538 NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKLLLLTLS 681
N+ + ++ G L V+LSNNN++ +H +F + L L L+
Sbjct: 333 NNCLTEVSQQTLKGAPFLRMVSLSNNNIREVHELSFDHLPNLHTLDLA 380
>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
constitutive dauerformation protein 2 protein.
Length = 1446
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 513 PGCYCKNREQHDWLYRPQCFPWCP 584
P CYC RE+H L + +C W P
Sbjct: 153 PDCYCGKREKHCDLSKEKCH-WTP 175
>AF022974-5|AAC48036.3| 347|Caenorhabditis elegans Seven tm
receptor protein 208 protein.
Length = 347
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = -2
Query: 453 VFDHEIKDIIAELLCTDFEEAALGLSVSLRYRAYAVSGTGPVLVVQNLLVF 301
+ +++ ++ L C F + SV YR +AVSG + + + +F
Sbjct: 83 LLSYDVLLLLVSLCCAFFGSLMVMFSVQFIYRFWAVSGNNSIKTFEGVRIF 133
>Z66565-4|CAA91480.1| 384|Caenorhabditis elegans Hypothetical
protein T04F8.4 protein.
Length = 384
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -3
Query: 494 NMKSSRLIG*RGSAFSTTRSRISSPNFCVPISRKLHLACLY 372
NM R+I G FST P F + + H+ C+Y
Sbjct: 93 NMDRQRMIAPEGMMFSTVLIISFHPLFLTRMDKAYHIRCMY 133
>AL033514-39|CAA22095.2| 401|Caenorhabditis elegans Hypothetical
protein Y75B8A.5 protein.
Length = 401
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 508 LHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKL 663
L + + I +S + IAP+AF G+ + + L L ++ FAN + L
Sbjct: 233 LSHTSHLLIEHSKVPSIAPDAFSGLTTIQVIELHACQLGTISARAFANVENL 284
>AF025460-5|AAB70988.5| 584|Caenorhabditis elegans Polh (dna
polymerase eta) homologprotein 1 protein.
Length = 584
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 501 TRTSPGCYCKNREQHDWLY 557
TR PG +NR H+WLY
Sbjct: 426 TRFQPGIPAQNRSIHEWLY 444
>AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated
ion channel protein 10 protein.
Length = 493
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -1
Query: 451 FRPRDQGYHRRTFVYRFRGSCTWLVC--IPEIQSICSLWD 338
+R R R YRF C L+ +PEIQSIC + +
Sbjct: 386 YRKRRSTVFRGVHNYRFNQECDDLMYSKVPEIQSICMMME 425
>AB244413-1|BAE72703.1| 584|Caenorhabditis elegans DNA polymerase
eta protein.
Length = 584
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 501 TRTSPGCYCKNREQHDWLY 557
TR PG +NR H+WLY
Sbjct: 426 TRFQPGIPAQNRSIHEWLY 444
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,881,491
Number of Sequences: 27780
Number of extensions: 315848
Number of successful extensions: 1031
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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