Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30f21
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    39   5e-05
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    24   1.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   3.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   3.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   3.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 38.7 bits (86), Expect = 5e-05
 Identities = 26/84 (30%), Positives = 46/84 (54%)
 Frame = +1

Query: 430 ILDLVVENADPRYPINLDDFMFKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLS 609
           ++ L+V N       ++D  MFK L   Q+  ++  N++I  I  NAF  +++L+ + LS
Sbjct: 334 LIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLR--NNSIDRIESNAFLPLYNLHTLELS 391

Query: 610 NNNLKSLHPETFANNKKLLLLTLS 681
           +N L+++  + F     L  LTLS
Sbjct: 392 DNKLRTVGAQLFNGLFVLNRLTLS 415



 Score = 21.8 bits (44), Expect = 6.2
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = +1

Query: 502 LGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKLLLLTLS 681
           LGL ++  + +  + + +I    F  +  L  ++L NN++  +    F     L  L LS
Sbjct: 332 LGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELS 391


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 235 KTVKKDKDADNLLDQYEDYEPAEYQEVLYNEDRPCPRDC 351
           +T +KD  +D+++ +       + Q++L + + PC  DC
Sbjct: 309 ETHQKDGSSDSVIKRTVVSSYLQLQDLLGDFEHPCVMDC 347


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 235 KTVKKDKDADNLLDQYEDYEPAEYQEVLYNEDRPCPRDC 351
           +T +KD  +D+++ +       + Q++L + + PC  DC
Sbjct: 224 ETHQKDGSSDSVIKRTVVSSYLQLQDLLGDFEHPCVMDC 262


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 235 KTVKKDKDADNLLDQYEDYEPAEYQEVLYNEDRPCPRDC 351
           +T +KD  +D+++ +       + Q++L + + PC  DC
Sbjct: 543 ETHQKDGSSDSVIKRTVVSSYLQLQDLLGDFEHPCVMDC 581


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 226 SINKTVKKDKDADNLLDQYEDYEPAEYQE 312
           S+N   KK  D   LL  Y D+  A+Y +
Sbjct: 89  SLNVISKKVGDGGPLLQPYPDWSFAKYDD 117


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 226 SINKTVKKDKDADNLLDQYEDYEPAEYQE 312
           S+N   KK  D   LL  Y D+  A+Y +
Sbjct: 89  SLNVISKKVGDGGPLLQPYPDWSFAKYDD 117


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 226 SINKTVKKDKDADNLLDQYEDYEPAEYQE 312
           S+N   KK  D   LL  Y D+  A+Y +
Sbjct: 89  SLNVISKKVGDGGPLLQPYPDWSFAKYDD 117


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 194 SWQHARWYSANLSIKPS 244
           SW    W  ++LS KPS
Sbjct: 93  SWMTLMWTDSHLSWKPS 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,888
Number of Sequences: 438
Number of extensions: 4001
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)