Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30f20
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    26   4.8  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    25   8.3  

>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +2

Query: 53  NISKLLHKSFNNVHSVISEGFCDNIMNILLFIEYSLP 163
           N+S  L ++F+++  +I    CDNI+  LL  +Y++P
Sbjct: 391 NVSNDLFQAFDSIALIIFIPICDNIIYPLL-RKYNIP 426


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 328 TVFIWILELQN*WFLFVFLKKFRVDLDYVIMK 233
           TVF W+L + N   LFV+L    +++ Y+I +
Sbjct: 432 TVFDWLLSISNLATLFVWLS---INVSYIIYR 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,525
Number of Sequences: 5004
Number of extensions: 38526
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)