Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30f15
(311 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 25 2.6
SPCC1739.09c |cox13||cytochrome c oxidase subunit VIa|Schizosacc... 25 2.6
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida... 25 3.5
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S... 24 4.6
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 24 4.6
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 24 4.6
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 24 6.1
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc... 24 6.1
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M... 24 6.1
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy... 23 8.1
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ... 23 8.1
SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|... 23 8.1
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 2.6
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +3
Query: 60 IDGKLVALKRSATNKKWIYCRKEYHARNVQFVKLLI 167
I+G ++A + + +++ RK+Y+ V K +I
Sbjct: 137 IEGAIIAARAVEASACYLFIRKDYYEETVMMQKCII 172
>SPCC1739.09c |cox13||cytochrome c oxidase subunit
VIa|Schizosaccharomyces pombe|chr 3|||Manual
Length = 130
Score = 25.0 bits (52), Expect = 2.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 78 ALKRSATNKKWIYCRKEYHARNVQ 149
AL ++ N +IYC+ + HA++V+
Sbjct: 68 ALILASANAYYIYCKHQEHAKHVE 91
>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
imidazole acetol phosphate transaminase
His3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 24.6 bits (51), Expect = 3.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 10 NIAVFMKNLESFGLLGVLMGSWWP*KDLLPIKNGFTVAKNIMQ 138
N+AV +SFGL G+ +G K + I N NI +
Sbjct: 214 NLAVCQTLSKSFGLAGIRIGFCLTSKPIATIMNSLKAPYNISE 256
>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 24.2 bits (50), Expect = 4.6
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 42 LWVIGCIDGKLVAL 83
+W IGCI G+++AL
Sbjct: 202 VWAIGCIYGEMLAL 215
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 24.2 bits (50), Expect = 4.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 15 CSFYEKFRILWVIGCID 65
C FY K R +W + ID
Sbjct: 137 CKFYTKLRFIWGVKFID 153
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 24.2 bits (50), Expect = 4.6
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 213 RTYVFRLYSFQLNCNCVY 266
R+++ RL+S + +C CVY
Sbjct: 624 RSFLRRLFSSEPSCKCVY 641
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 23.8 bits (49), Expect = 6.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 91 LLPIKNGFTVAKNIMQ 138
+LPIKNGF + K Q
Sbjct: 511 ILPIKNGFLMGKETFQ 526
>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 23.8 bits (49), Expect = 6.1
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -3
Query: 174 RKILIALQIVHFLHDILCDSKSIFY 100
++IL +++VH + + DS +FY
Sbjct: 236 KRILFPMEVVHSVRKAIPDSMPLFY 260
>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 388
Score = 23.8 bits (49), Expect = 6.1
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 12 YCSFYEKFRILWVIGCIDGKLVALKRSATNKKWIYCRKEY 131
Y F E+ + + C G++ ALK ++++ Y +EY
Sbjct: 74 YIIFPEEAEFIKIDECTTGRVYALKFKSSSQIHFYWMQEY 113
>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 23.4 bits (48), Expect = 8.1
Identities = 6/20 (30%), Positives = 11/20 (55%)
Frame = -1
Query: 158 LYKLYISCMIFFATVNPFFI 99
LY +Y+ C + +NP +
Sbjct: 218 LYSVYVDCQFTYLEINPLVV 237
>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 23.4 bits (48), Expect = 8.1
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 92 CYQ*KMDLLSQRISCKKCTI 151
CY+ +D+L+ +IS CT+
Sbjct: 188 CYECSLDMLTPKISYPICTL 207
>SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 207
Score = 23.4 bits (48), Expect = 8.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 202 FVYGLHIRISKNINSFTNCTFL 137
F YG ++ K + NCTFL
Sbjct: 89 FDYGFNVHFGKKFFANYNCTFL 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,325,424
Number of Sequences: 5004
Number of extensions: 25924
Number of successful extensions: 58
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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